PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g01860.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 374aa    MW: 41551 Da    PI: 7.4049
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g01860.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.11.7e-53161421128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   l+pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g
  Zjn_sc00015.1.g01860.1.sm.mk  16 LMPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTAAG 95 
                                   689***************************.89***************9888999************************** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +Wkatg+d++++s++++ +glkk+Lvfykgra +g ktdW+mhe+rl
  Zjn_sc00015.1.g01860.1.sm.mk  96 FWKATGTDRPIYSEGTKCIGLKKSLVFYKGRAARGMKTDWMMHEFRL 142
                                   *********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-5815173IPR003441NAC domain
PROSITE profilePS5100557.04616173IPR003441NAC domain
PfamPF023655.3E-2618142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEATNGISMD KSDEILMPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKYDPWD  60
LPKLASTGEK EWYFYCPRDR KYRNSARPNR VTAAGFWKAT GTDRPIYSEG TKCIGLKKSL  120
VFYKGRAARG MKTDWMMHEF RLPSSTDPTL PKRPIDKNIP LNDSWTICRI FKKTSSMAQR  180
GLLHTWGPPF PGATEAEMFS AFQTVQASEL ALESSSCSLQ AVPSAPSSQF TGRHALQGQQ  240
GNPPVEGSSC KLINFNCTPS LEPQNCPVIF PFEMPTSQKG AASVPLVFGE QSDHQLNGFV  300
VDSSAKVNGG TGSRSQDSSP TKPGNGVSMT SSDWEDVGMI NFPFDLGADS SDWKCNMSWD  360
SFLSPAAVQT ELPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-531617617168NO APICAL MERISTEM PROTEIN
1ut4_B5e-531617617168NO APICAL MERISTEM PROTEIN
1ut7_A5e-531617617168NO APICAL MERISTEM PROTEIN
1ut7_B5e-531617617168NO APICAL MERISTEM PROTEIN
4dul_A5e-531617617168NAC domain-containing protein 19
4dul_B5e-531617617168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822140.10.0protein FEZ-like
SwissprotQ9ZVH04e-94FEZ_ARATH; Protein FEZ
TrEMBLK3YMN30.0K3YMN3_SETIT; Uncharacterized protein
STRINGSi015514m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.15e-96NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]