PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00015.1.g01540.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 765aa MW: 81277.5 Da PI: 10.2238

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00015.1.g01540.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.7	1.3e-10	434	511	3	32
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.................................................. CS HLH 3 rahnerErrRRdriNsafeeLrellPkas................................................k 32 r+h+e+ErrRR+riN +++Lr+llP+ + + Zjn_sc00015.1.g01540.1.am.mk 434 RSHSEAERRRRQRINGHLARLRSLLPNTTkvidalrhareglvgnrapcgmrdrssspcktraharvrahhlrlthgA 511 78*************************755666666666666666666666666555555555555555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.998	431	487	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.48E-7	434	473	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-10	434	460	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-8	434	489	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.2E-10	435	459	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-5	437	592	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-10	566	596	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.2E-10	566	597	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	5.72E-5	642	692	No hit	No description
Gene3D	G3DSA:3.30.70.260	3.8E-6	642	690	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence Send to blast
MISSSRALAG PGPAAALNSH WARLAAYNGC RWCRRRHHRI RRADRSFPFA IDRHRSTKQT 60 CTISSALALV STLDSSEGSC ERVAGRAGGA TGSRHRRPRG ACSVVGARRA GAEGRNHSVS 120 FSKAGPGLRL RVGCRTKSKA RLRRAGYSCT TSYARGEGRG GVRGIRRDSC CESACLIRGL 180 GGGDRISLPG TAVSLADGME IHLASSYRGA RQEISAVNDV GTSRRLIANM SPRLYSSLQP 240 SRPLPDRLTA PEKKPQEHQS TETNPPRIHQ QPRGITPLSI DRLISSADRS IWMWEAGGLH 300 GSHEALLLQA AGSGAGDVVH GQASGLLPCT WLGPATAPSY PYMAPHAPPE PGHLFGVDDA 360 AAGPFGFDVG GYGGGAGVGV GLFGLDPPSH QHHGMVADAG SSRVVSGLLG TLQAELGRMT 420 AKEILDAKAL AASRSHSEAE RRRRQRINGH LARLRSLLPN TTKVIDALRH AREGLVGNRA 480 PCGMRDRSSS PCKTRAHARV RAHHLRLTHG AATHQKLSSG SSRPGRACKG CSHARDFCKL 540 FLHARMPSSH QTRPLDRLLL SPTATTTLVT DKASLLAEVI EHVKELKRQT SAVLDAAERQ 600 EDQQGDAPSA TQQMLRLLPT EADELEVDAA EDGDGRLVVR ASLCCEDRAG LIPDVARALA 660 ALRLRARRAE IATLGGRVRN VLLITADDDE AEADGDDDVD GDGCEGAGAA QSHRRHELVA 720 AVEEALRGVM DRKAASSSDA SSSSAGSGSL KRQRMSGGAY EQGSF

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence Send to blast

MISSSRALAG PGPAAALNSH WARLAAYNGC RWCRRRHHRI RRADRSFPFA IDRHRSTKQT  60
CTISSALALV STLDSSEGSC ERVAGRAGGA TGSRHRRPRG ACSVVGARRA GAEGRNHSVS  120
FSKAGPGLRL RVGCRTKSKA RLRRAGYSCT TSYARGEGRG GVRGIRRDSC CESACLIRGL  180
GGGDRISLPG TAVSLADGME IHLASSYRGA RQEISAVNDV GTSRRLIANM SPRLYSSLQP  240
SRPLPDRLTA PEKKPQEHQS TETNPPRIHQ QPRGITPLSI DRLISSADRS IWMWEAGGLH  300
GSHEALLLQA AGSGAGDVVH GQASGLLPCT WLGPATAPSY PYMAPHAPPE PGHLFGVDDA  360
AAGPFGFDVG GYGGGAGVGV GLFGLDPPSH QHHGMVADAG SSRVVSGLLG TLQAELGRMT  420
AKEILDAKAL AASRSHSEAE RRRRQRINGH LARLRSLLPN TTKVIDALRH AREGLVGNRA  480
PCGMRDRSSS PCKTRAHARV RAHHLRLTHG AATHQKLSSG SSRPGRACKG CSHARDFCKL  540
FLHARMPSSH QTRPLDRLLL SPTATTTLVT DKASLLAEVI EHVKELKRQT SAVLDAAERQ  600
EDQQGDAPSA TQQMLRLLPT EADELEVDAA EDGDGRLVVR ASLCCEDRAG LIPDVARALA  660
ALRLRARRAE IATLGGRVRN VLLITADDDE AEADGDDDVD GDGCEGAGAA QSHRRHELVA  720
AVEEALRGVM DRKAASSSDA SSSSAGSGSL KRQRMSGGAY EQGSF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004666	9e-61	AP004666.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0431A03.
GenBank	AP014964	9e-61	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	9e-61	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020402268.1	2e-55	transcription factor bHLH30
TrEMBL	A0A1D6KP73	4e-54	A0A1D6KP73_MAIZE; Transcription factor AIG1
STRING	Sb07g021170.1	7e-53	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP33654	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	6e-20	bHLH family protein