PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00015.1.g01120.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 144aa MW: 15041.3 Da PI: 5.16 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 40.1 | 8e-13 | 5 | 29 | 27 | 51 |
G2-like 27 AtPktilelmkvkgLtlehvkSHLQ 51 AtPk++lelm+vk+Ltl+hvkSHLQ Zjn_sc00015.1.g01120.1.am.mk 5 ATPKSVLELMDVKDLTLAHVKSHLQ 29 9************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01557 | 1.3E-8 | 4 | 29 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.1E-10 | 5 | 29 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MLAGATPKSV LELMDVKDLT LAHVKSHLQA RPIDGGGSGD EDLQNAEQAQ SAGDINRQPF 60 AAHRSASSEG ATSQAGGGDL ECSSGADDSD GSRARSTSSR MSQNLADQLA CSRYPTKIWE 120 ALAWSSRWGD QTGTGKNMTS SAKN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696540.1 | 3e-22 | PREDICTED: probable transcription factor RL9 | ||||
TrEMBL | A0A3L6RKZ8 | 2e-20 | A0A3L6RKZ8_PANMI; Putative transcription factor RL9 | ||||
TrEMBL | J3MX73 | 8e-21 | J3MX73_ORYBR; Uncharacterized protein | ||||
STRING | Pavir.Fb00812.1.p | 1e-24 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP33646 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 3e-11 | G2-like family protein |