PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g00570.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 287aa    MW: 30247.9 Da    PI: 6.0315
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g00570.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-21104153255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Zjn_sc00015.1.g00570.1.sm.mk 104 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 153
                                   59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.32E-31103163No hitNo description
SuperFamilySSF541714.71E-23104163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-33104163IPR001471AP2/ERF domain
SMARTSM003801.5E-35104167IPR001471AP2/ERF domain
PROSITE profilePS5103223.354104161IPR001471AP2/ERF domain
PfamPF008477.0E-15105153IPR001471AP2/ERF domain
PRINTSPR003672.4E-11105116IPR001471AP2/ERF domain
PRINTSPR003672.4E-11127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAAAINHPGT GEDMMRALEP FILDAPPAAP QMPSSFPSAG FHYMGVPGQT AQLSPAQMQF  60
IQAQLHLQRN PGLGPRAQPM KPASGAGTGS TAAASAHPPR PQKLYRGVRQ RHWGKWVAEI  120
RLPRNRTRLW LGTFDTAEEA ALAYDQAAYR LRGDAARLNF PDNAASRAPL EPAVDAKLQT  180
ICATIAAASS SSKGGKGRVG AVPINMAPQA QPMSPSRSSS DEEGSGSGSS DDDEAASSAA  240
AAVAAVAPLA EMGQLDFGEV PWDEAESFVL RKYPSYEIDW DALLGSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20103161463ATERF1
3gcc_A6e-20103161463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7423451e-115KP742345.1 Saccharum spontaneum NAC1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820073.11e-117ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A0A9FEZ51e-131A0A0A9FEZ5_ARUDO; Uncharacterized protein
STRINGPavir.Fa01600.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-40ERF family protein