PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g07310.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 289aa MW: 30755.8 Da PI: 6.8084

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g07310.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.6e-08	139	183	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a++L + +Y+k L Zjn_sc00014.1.g07310.1.sm.mkhc 139 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 183 99*********************7.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.02E-15	132	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.86E-10	132	188	No hit	No description
PROSITE profile	PS50888	15.77	134	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-14	136	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-6	139	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-9	140	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0031347	Biological Process	regulation of defense response
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MAGQPTPPQG PEDDFLDQFF SMAAGGSYSA AAAGGGRVAG DQPFSLALSL DAAAEASGSG 60 KRLGGDAEGG KADRDAVQLP GLFPPVFGAG LQQPHLRPNP PPQVFHAQQQ KQGGAGVGPQ 120 PPVPRPKVRA RRGQATDPHS IAERLRRERI AERMRALQEL VPNTNKTDRA AMLDEILDYV 180 KFLRLQVKVL SMSRLGGAGA VAQLVSDIPL SVKGEVSDNG SKQQIWEKWS TDGTEKQVAK 240 LMEEDIGAAM QFLQSKALCM MPISLAMAIY DTQQSQDGQP VKPEPNTPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	148	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK104412	0.0	AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001152044.1	1e-171	uncharacterized protein LOC100285681
Swissprot	O22768	3e-76	UNE12_ARATH; Transcription factor UNE12
TrEMBL	B6U846	1e-170	B6U846_MAIZE; BHLH transcription factor
STRING	GRMZM2G004356_P01	1e-171	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2656	35	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	3e-63	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]