PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g06480.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 465aa MW: 50416.2 Da PI: 7.8277

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g06480.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.8	6.9e-17	325	370	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksL Zjn_sc00014.1.g06480.1.am.mkhc 325 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIEYMKSL 370 5***********************8.....6**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.31E-17	316	375	No hit	No description
SuperFamily	SSF47459	7.33E-20	319	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.406	321	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-14	325	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-21	325	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-17	327	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
PTDPVLSEKG KCTLARQRRY ILVVLRMLYC YVARAFCVCR CSPPERTEKR PALEESPPYS 60 GRQTSVAMTR RISPNNCDEM DCNARSSAAS QKKPIIADSD LVELLWHNGS VVAQPQAHQP 120 AAPPPSDRPS SSGLTGEETA AWFPDTLDDA LEKDLYTQLW YSAIADASPQ PGDAIPGPRS 180 QPPLGMAHPA RPPVGSGVES SWAGDICSAF CGSNQVFSGV PAGDRAEDTA LPSEPAPCGT 240 STRDGAGTGT SSSGGSGSNF GGSRLRSDSG HAHKKNGRCR DDTDSRSEVF LELTRKLQAV 300 ECEATEVTKS SRRHGSKRRT RTAEVHNLSE RRRRDRINEK MRALQELIPH CNKTDKASIL 360 DEAIEYMKSL KMQVQMQNIH LREVSNPFLY PDGEQTAAPE VPRSHGYGTQ TAQTAQPNRI 420 PELPGPHGYG TQTAQTAQFS RIPKVPASTV LPTSTVGQPP TYDGV

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

PTDPVLSEKG KCTLARQRRY ILVVLRMLYC YVARAFCVCR CSPPERTEKR PALEESPPYS  60
GRQTSVAMTR RISPNNCDEM DCNARSSAAS QKKPIIADSD LVELLWHNGS VVAQPQAHQP  120
AAPPPSDRPS SSGLTGEETA AWFPDTLDDA LEKDLYTQLW YSAIADASPQ PGDAIPGPRS  180
QPPLGMAHPA RPPVGSGVES SWAGDICSAF CGSNQVFSGV PAGDRAEDTA LPSEPAPCGT  240
STRDGAGTGT SSSGGSGSNF GGSRLRSDSG HAHKKNGRCR DDTDSRSEVF LELTRKLQAV  300
ECEATEVTKS SRRHGSKRRT RTAEVHNLSE RRRRDRINEK MRALQELIPH CNKTDKASIL  360
DEAIEYMKSL KMQVQMQNIH LREVSNPFLY PDGEQTAAPE VPRSHGYGTQ TAQTAQPNRI  420
PELPGPHGYG TQTAQTAQFS RIPKVPASTV LPTSTVGQPP TYDGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	333	KRRTRTAEVHNLSERRRR
2	329	334	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981539.1	1e-123	transcription factor PIF4 isoform X1
Refseq	XP_004981540.1	1e-123	transcription factor PIF4 isoform X1
Refseq	XP_012704121.1	1e-123	transcription factor PIF4 isoform X1
Swissprot	Q10CH5	1e-90	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	A0A1E5URH3	1e-131	A0A1E5URH3_9POAL; Transcription factor PIF5
STRING	Pavir.Ia00490.1.p	1e-123	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-28	phytochrome interacting factor 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]