PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g04790.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 399aa    MW: 41817.9 Da    PI: 9.1883
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g04790.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.6e-32231287258
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                                     +Dgy+WrKYGqK vk+s+fprsY+rCt ++C+vkk+vers++dp+vv++tYeg+H h
  Zjn_sc00014.1.g04790.1.am.mkhc 231 EDGYRWRKYGQKAVKNSPFPRSYFRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCH 287
                                     8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-33215288IPR003657WRKY domain
SuperFamilySSF1182901.07E-27222288IPR003657WRKY domain
PROSITE profilePS5081129.207225290IPR003657WRKY domain
SMARTSM007743.4E-38230289IPR003657WRKY domain
PfamPF031061.7E-25231287IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAGAAGYGPQ GAGEDWPFAG AVDAFADYSS VLAELGWPGG LAADLSVLDL PEATRLAPEL  60
ARPEEIVAAP GMSGDAAGAS SSSSGDGPGH GAARGNGGQK PADEAVWTFE VAGAALPFSE  120
WQRSATRLYV HRGCAFGRAI SYIASWALRG SGACRVDRLS RRDLRMGRAS PCSSDALFSL  180
IRMSSAASAS SGVVGLWRVA VKPAAPAKKG PKRVRQPRFA FMTKSEIDHL EDGYRWRKYG  240
QKAVKNSPFP RSYFRCTNSK CTVKKRVERS SDDPSVVITT YEGQHCHYTA AAAAFQSGAG  300
PASAHRIHSA AAAVALAEQM PFVAAAQRRL SPFHPQSSPP SCSETAVDVT AALTSSLQQY  360
LSGSERVSMP STPSSVAQAP ASVEKGLLDD IVPHGVRHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-25220287774Probable WRKY transcription factor 4
2lex_A6e-25220287774Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586084e-92KU058608.1 UNVERIFIED: Panicum miliaceum WRKY8-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559239.15e-69probable WRKY transcription factor 48
RefseqXP_010229633.15e-69probable WRKY transcription factor 48
RefseqXP_010229639.15e-69probable WRKY transcription factor 48
TrEMBLA0A1E5W3W43e-70A0A1E5W3W4_9POAL; Putative WRKY transcription factor 57
STRINGPavir.J37837.1.p3e-69(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-45WRKY DNA-binding protein 57