PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g02900.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 299aa MW: 33087.9 Da PI: 9.9739

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g02900.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.1	2.1e-10	154	202	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Zjn_sc00014.1.g02900.1.am.mkhc 154 NNHSLAERLRRKKISERMKLLQDLVPGC----HKITGKAVMLDEIINYVQSLQ 202 58***********************9....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-16	149	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.54E-10	149	206	No hit	No description
PROSITE profile	PS50888	15.466	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-16	151	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.2E-8	154	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-10	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MRARRNHFTS AAGKVTNTTQ QQRSSCLLLP PLALKNLSPP PHLAVKFVIL PCLGWERRSQ 60 LLKCTATPGN SANKKKERSS SRSRVLELFQ RICLRLQTVG DQLTEGSSPQ ERNSMEEGNK 120 KISPKLQSKE DSSDGDGTKD DYVHVRAKRG QATNNHSLAE RLRRKKISER MKLLQDLVPG 180 CHKITGKAVM LDEIINYVQS LQRQVEMMLS QDRHIAFYGA DPGSISLVSQ YNPGIVPPEM 240 MCGVSNPLDV LQGTIHNVSA VNQMPAMWEG LHMPHMNFNP GVAADSGGTN DAGSLKIEQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981901.1	1e-112	transcription factor bHLH49
Refseq	XP_004981902.1	1e-112	transcription factor bHLH49
Refseq	XP_022678584.1	1e-112	transcription factor bHLH49
TrEMBL	A0A1D6L307	1e-111	A0A1D6L307_MAIZE; Transcription factor bHLH62
TrEMBL	K4ACS8	1e-111	K4ACS8_SETIT; Uncharacterized protein
STRING	Si036685m	1e-112	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6033	36	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	3e-38	bHLH family protein