PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g02570.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 354aa    MW: 38638.7 Da    PI: 6.6308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g02570.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12176223355
                                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  Zjn_sc00014.1.g02570.1.sm.mkhc 176 QDHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 223
                                     67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.809173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10176223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17176242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-17177234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.88E-14178227No hitNo description
SMARTSM003531.0E-14179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDALLEQYT EQQIAVAFGQ GEVDQAALAA LMPQRYDYAT  60
PAAVEHRQRK AARVNTTSWD SCITEQGSPA DSSSPTILSF GGHAAATAFS KGDAQVPNAP  120
SYYGHSATAQ VKAPKQEVVD AGVSPFHARS VKRSYDAMVA AEAQAPVPSR SASQNQDHIL  180
AERKRREKLS QRFIALSKIV PGLKKMDKAS VLGDAIKYVK QLQEQIKGLE NEARRRPVEA  240
AVLVKKSQLC ADDDDGSSCD ENFLGGEAGA LPEIEARVSD RTVLVKIHCE SRKGALITAL  300
SEVERLGLTI MNTNVLPFTS SFLDITIMAT IGDEFCLSVK DIVKKLNQAF KPSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13177232863Transcription factor MYC2
5gnj_B5e-13177232863Transcription factor MYC2
5gnj_E5e-13177232863Transcription factor MYC2
5gnj_F5e-13177232863Transcription factor MYC2
5gnj_G5e-13177232863Transcription factor MYC2
5gnj_I5e-13177232863Transcription factor MYC2
5gnj_M5e-13177232863Transcription factor MYC2
5gnj_N5e-13177232863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERKRRE
2182187RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365521e-163BT036552.2 Zea mays full-length cDNA clone ZM_BFb0123D23 mRNA, complete cds.
GenBankEU9565961e-163EU956596.1 Zea mays clone 1567551 symbiotic ammonium transporter mRNA, complete cds.
GenBankKJ7268631e-163KJ726863.1 Zea mays clone pUT3404 bHLH transcription factor (bHLH137) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661241.10.0transcription factor bHLH18
TrEMBLK4ABY60.0K4ABY6_SETIT; Uncharacterized protein
STRINGSi036393m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-60bHLH family protein