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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00014.1.g00900.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YA | ||||||||
Protein Properties | Length: 275aa MW: 29622.3 Da PI: 10.2141 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.3 | 1.1e-32 | 151 | 207 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ k+rkpylheSRh+hA+rR+Rg+gGrF Zjn_sc00014.1.g00900.1.sm.mkhc 151 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKARKPYLHESRHQHAMRRARGNGGRF 207 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.8E-36 | 149 | 210 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.498 | 150 | 210 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.0E-28 | 152 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.0E-25 | 153 | 175 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 155 | 175 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 8.0E-25 | 184 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MESRPVGTNL VEPRAQAAAL PPGGVAMQPW WTGGGLGAVS PAVVAPGIGL SSNSPVGGAG 60 KAGDDARDES SEESRRSGES KDIDARWKHE SRKEPCHITY ACFGVRASAA YQYPDAYYSG 120 MVGPYGTQPG TQFQLHGLTH SRMPLPLEIS EEPVYVNAKQ YHGILRRRQS RAKAELEKKV 180 VKARKPYLHE SRHQHAMRRA RGNGGRFLNT KKIDNGTPNG KADPKKVLLV GGAGRPTASS 240 LSRIGTIRAP KFGSAVAATT TLNILDENEE QYTSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 7e-22 | 151 | 215 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795066.1 | 1e-100 | nuclear transcription factor Y subunit A-9-like | ||||
TrEMBL | A0A3L6TLH3 | 1e-101 | A0A3L6TLH3_PANMI; Nuclear transcription factor Y subunit A-1-like | ||||
STRING | Pavir.J08102.1.p | 1e-100 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8205 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 2e-31 | nuclear factor Y, subunit A7 |