PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g10380.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 642aa MW: 72262.8 Da PI: 9.4957

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g10380.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.5	2.2e-13	15	66	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q+++Le+++ +yp+ +e+ + A+ +gLt +qV++WF+ rR ke++ Zjn_sc00013.1.g10380.1.am.mkhc 15 KKSPLQIQRLEKFYTDVQYPKPAEMVQYAAFVGLTYNQVRIWFKERRRKERR 66 56899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.2E-13	9	71	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-13	13	69	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-12	14	70	IPR009057	Homeodomain-like
CDD	cd00086	1.65E-8	14	57	No hit	No description
Pfam	PF00046	9.4E-11	15	66	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.54	20	67	IPR001356	Homeobox domain
Pfam	PF15612	6.8E-6	430	461	IPR028942	WHIM1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence Send to blast
MVTSLGAIRA NGGTKKSPLQ IQRLEKFYTD VQYPKPAEMV QYAAFVGLTY NQVRIWFKER 60 RRKERREMET VGAHTERQLS SRASGPSSTS SCTQAPMSES SSISIGEEPT VRPQALFPKD 120 YILRKIFRKD GPPLGSEFDP LPQSALANIR DVTSHHSSQN QRVVKKRKAM EYSNQRSKKP 180 NEVTVPVRKH GIGKGLMTVW HAMYSHNVEC QGHSSFIDET GCLRSLRPFD ECDGFEGQDN 240 GKRTQMKSQN KGMARKKVDK RSKAPLNKRK VPCSRVFVPE QHSILDCHLS VDVSESSEVQ 300 TEHVALVDDE ELELSELQSG PNPLQCSAHL SSSGRHGCPL CKDLLAKFPP RSVKMKQALS 360 MKPWGSSPNM IVRFVYTHFG SIDVHPFTFD EFAQAFHDKV REQEFDVNFW LKSLNSLTWV 420 EILRQVLVAS GERWLLGLME GEYSDLSIDE KLDCLVALID VISGAGSVPR LEEPQKVSLN 480 VSKAQPRPSG MMTQDIVGST LSLRKMVTGR WLTHHREPEV VHEVPNYKVL PSQLQALKAG 540 IHAIEASMPE VAFVGSWKKS AHKLWVKRLR RTSSLPELLK VLVDFVGAVN KDWLYKNSSS 600 VGFSSYLDDI IVYFQTMPQT TSAVALWVVK LDALIAPYLD KS

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence Send to blast

MVTSLGAIRA NGGTKKSPLQ IQRLEKFYTD VQYPKPAEMV QYAAFVGLTY NQVRIWFKER  60
RRKERREMET VGAHTERQLS SRASGPSSTS SCTQAPMSES SSISIGEEPT VRPQALFPKD  120
YILRKIFRKD GPPLGSEFDP LPQSALANIR DVTSHHSSQN QRVVKKRKAM EYSNQRSKKP  180
NEVTVPVRKH GIGKGLMTVW HAMYSHNVEC QGHSSFIDET GCLRSLRPFD ECDGFEGQDN  240
GKRTQMKSQN KGMARKKVDK RSKAPLNKRK VPCSRVFVPE QHSILDCHLS VDVSESSEVQ  300
TEHVALVDDE ELELSELQSG PNPLQCSAHL SSSGRHGCPL CKDLLAKFPP RSVKMKQALS  360
MKPWGSSPNM IVRFVYTHFG SIDVHPFTFD EFAQAFHDKV REQEFDVNFW LKSLNSLTWV  420
EILRQVLVAS GERWLLGLME GEYSDLSIDE KLDCLVALID VISGAGSVPR LEEPQKVSLN  480
VSKAQPRPSG MMTQDIVGST LSLRKMVTGR WLTHHREPEV VHEVPNYKVL PSQLQALKAG  540
IHAIEASMPE VAFVGSWKKS AHKLWVKRLR RTSSLPELLK VLVDFVGAVN KDWLYKNSSS  600
VGFSSYLDDI IVYFQTMPQT TSAVALWVVK LDALIAPYLD KS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	66	RRRKERRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793779.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
Refseq	XP_025793780.1	0.0	homeobox-DDT domain protein RLT3 isoform X2
TrEMBL	A0A2T7CF08	0.0	A0A2T7CF08_9POAL; Uncharacterized protein
STRING	Pavir.Ib01030.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-56	Homeodomain-like transcriptional regulator