PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g08240.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 349aa    MW: 37731.1 Da    PI: 5.7926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g08240.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.5e-191161256
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                                  +++GVr+++ +grW+AeIrdp     +  +r +lg+f taeeAa a++ a  +l+g+
  Zjn_sc00013.1.g08240.1.sm.mk 11 HFRGVRQRP-WGRWAAEIRDP-----HhrRRLWLGTFNTAEEAAVAYDSASIRLHGA 61
                                  69*******.**********7.....447*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-221169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-291169IPR001471AP2/ERF domain
PROSITE profilePS5103223.3541168IPR001471AP2/ERF domain
CDDcd000183.15E-321170No hitNo description
PfamPF008472.4E-121160IPR001471AP2/ERF domain
SMARTSM003801.4E-321174IPR001471AP2/ERF domain
PRINTSPR003673.2E-101223IPR001471AP2/ERF domain
PRINTSPR003673.2E-103450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEALGPRPDV HFRGVRQRPW GRWAAEIRDP HHRRRLWLGT FNTAEEAAVA YDSASIRLHG  60
AGATTNFPTA RYLPPLEPAE PIVSLSPAPG TVITLPPVPV NPTVPLQLEK DVGSCEDQGE  120
VGATTLVEVP VHQQIVSLTP APGTLITLPP VPVNPTVPQQ VMDEVGSCED QEELGATSLV  180
EVPGRQQIVS LTHASWLPQT LPHTLPPVPV NPTVPQQVMK EVGSCEDQEE VGATSLVEVP  240
VHQQIVSLPG LLITLLPVPG NPTVPLLVMK EVGSCEDQEE VGATSLVEMP VHQQMPLRET  300
IAGHALRAQQ ARWAHASHRY HTWAMPTSCA ALCPGGRTTF HKHVIVLHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-211168563ATERF1
3gcc_A3e-211168563ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00124DAPTransfer from AT1G03800Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.17e-27ERF domain protein 10