PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g08180.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 296aa MW: 33308.7 Da PI: 7.5567

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g08180.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.3	2.5e-52	19	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtd+elv +yL++k++g++l++ +i+evd+yk++PwdLp+++ +++ewyfF++rd+ky++g+r+nra+ Zjn_sc00013.1.g08180.1.sm.mkhc 19 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKFDPWDLPERALFGTREWYFFTPRDRKYPNGSRPNRAAG 96 79**************************.88***********8877899******************** PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatg dk+v +g++ g+kk Lvfy g+ap+g+ktdW+mheyrl Zjn_sc00013.1.g08180.1.sm.mkhc 97 DGYWKATGADKPVAP-GGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 144 *********99.9****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-65	15	171	IPR003441	NAC domain
PROSITE profile	PS51005	60.539	19	171	IPR003441	NAC domain
Pfam	PF02365	3.9E-27	20	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MTMGTAVRRE RDAEAELNLP PGFRFHPTDD ELVEHYLCRK AAGQRLPVPI IAEVDLYKFD 60 PWDLPERALF GTREWYFFTP RDRKYPNGSR PNRAAGDGYW KATGADKPVA PGGRTLGIKK 120 ALVFYAGKAP RGVKTDWIMH EYRLADAGRA AAAKKGSLRL DDWVLCRLYN KKNEWEKMRM 180 KKAAAAATAA KEEAGDMTTY SHSQSWGETR TPESEILDND TFPTFLDPEA QMMAPKKEKV 240 DDAAAKNNLF VDLSYDDIQS MYNGLDMLPT PGEDFYSSLF ASLRVKGNQS AGMALF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-110	6	177	2	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269\|PubMed:16924117, ECO:0000269\|PubMed:20632034}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269\|PubMed:16924117, ECO:0000269\|PubMed:20632034}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM017010	0.0	KM017010.1 Miscanthus lutarioriparius NAC12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466217.1	1e-172	NAC domain-containing protein 67
Swissprot	Q75HE5	1e-156	NAC2_ORYSJ; NAC domain-containing protein 2
TrEMBL	A0A191UR35	1e-174	A0A191UR35_ELECO; NAC transcription factor
STRING	Sb01g003710.1	1e-172	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4414	30	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08790.1	8e-79	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Takasaki H, et al. The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] Chen Q,Wang Q,Xiong L,Lou Z A structural view of the conserved domain of rice stress-responsive NAC1. Protein Cell, 2011. 2(1): p. 55-63 [PMID:21337010]