PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g07150.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 232aa MW: 24671 Da PI: 9.5487

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g07150.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.2e-05	155	193	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 RR+ri +++ L+el+P+ K + a++L + +Y+k L Zjn_sc00013.1.g07150.1.sm.mkhc 155 LRRERITERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 193 6****************7.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.31E-8	132	198	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-11	137	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.979	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-4	154	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-11	154	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MAGQPPPPQG TEDDFFDQFF SMAAGGSYSA AAAGGGRAAG DQPFSLALSI DAAAEASGSG 60 KRIGGDAEDG KADRDSVQLP GLFPPMFGAG VQPPQLRANP PPQVFHAQQP KQGGAGIGPQ 120 PPAPRPKVRA RRGQATDPHS IAERLYFEPS VPLQLRRERI TERMRALQEL VPNTNKTDRA 180 AMLDEILDYV KFLRLQVKVL SMSRLGGAGA VAQLVSDIPL SVKTFVSERN FV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001152044.1	1e-111	uncharacterized protein LOC100285681
TrEMBL	B6U846	1e-109	B6U846_MAIZE; BHLH transcription factor
STRING	GRMZM2G004356_P01	1e-110	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2656	35	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-35	LJRHL1-like 1