PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g04860.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 690aa    MW: 74363.6 Da    PI: 10.324
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g04860.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY941.1e-29182238259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dgy+WrKYGqK+ k++e prsYY+Ct +gCpvkk vers  d+ ++eitY+g+Hnh+
  Zjn_sc00013.1.g04860.1.am.mk 182 KDGYSWRKYGQKQLKDAESPRSYYKCTREGCPVKKVVERSF-DGFITEITYKGRHNHP 238
                                   8****************************************.***************8 PP
2WRKY100.78.5e-32313371159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg++ prsYY+Ct  +C+v k++er+++dp++v +tY g+Hnh+
  Zjn_sc00013.1.g04860.1.am.mk 313 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADNCNVSKQIERASTDPRCVLTTYAGRHNHD 371
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-27178240IPR003657WRKY domain
SuperFamilySSF1182909.02E-24180240IPR003657WRKY domain
SMARTSM007742.8E-32181239IPR003657WRKY domain
PfamPF031064.0E-23182238IPR003657WRKY domain
PROSITE profilePS5081123.066183240IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-32298373IPR003657WRKY domain
SuperFamilySSF1182904.32E-27306373IPR003657WRKY domain
PROSITE profilePS5081134.303308373IPR003657WRKY domain
SMARTSM007742.0E-34313372IPR003657WRKY domain
PfamPF031062.3E-23314371IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MDDRRGRGGD AMRHRPFASA QERVFDGGGA GPSFGGDFDQ GSSYMELLSA GVNPQSPPPL  60
PQWAVEEVAA APAINLVPQS FSTANFTSSS SSYQHPASFA AVSPLSYSTQ PYAPLYLQQT  120
DLPPTQWPPR PAIMSAASSY LPPNFSFLPA AAHNNQLQQH VVHPRGGAGG QPSPAVIEQP  180
AKDGYSWRKY GQKQLKDAES PRSYYKCTRE GCPVKKVVER SFDGFITEIT YKGRHNHPRP  240
PQRGNDGDVP AGIIAEEALD GQSDHDDDED VLHEDHDGDE GRRAMGADGT VAGQRVVKKP  300
KIILQTPSDV DLLDDGYRWR KYGQKVVKGN PRPRSYYKCT ADNCNVSKQI ERASTDPRCV  360
LTTYAGRHNH DPPGQGPDAA AAPGGASAHH PAAAGGSGMF QQTGRIFCAC LHQGHAMFEF  420
QTFNQVISAN DRRKVTEKSA GCLPRILGPK NRPARAATSR NFPPKNSPTP ARPSPLRSPL  480
PAALPRVPTP CGRFPPASAM SQAQPVTPIR TTSSSAVSVP DLSSPSSPPK SRRKPSPRRH  540
LLADAGAGIL EVLPGRRAQA RDLLPLVAPA PAGASDATLR GHRHGQDVRS SPPLRHVRPR  600
PRRVTNAALS SRPSSPSAAR RPPPLASALP TSPRTSLPPS ATPCWPIRAG RSCVVRSWDK  660
GGQLLALLLR LHQLIWLPQG RDRLCEQRHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-31183373877Probable WRKY transcription factor 4
2lex_A3e-31183373877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638034e-75AK363803.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2019A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020402538.11e-143probable WRKY transcription factor 26
TrEMBLA0A1E5VEH51e-143A0A1E5VEH5_9POAL; Putative WRKY transcription factor 58
STRINGPavir.J00850.1.p1e-136(Panicum virgatum)
STRINGGRMZM2G008029_P011e-137(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.15e-63WRKY DNA-binding protein 3