PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g03890.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 392aa    MW: 42012.6 Da    PI: 10.4453
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g03890.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31326384259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                      D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Zjn_sc00013.1.g03890.1.sm.mkhc 326 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 384
                                     69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.3E-13281323IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.7E-34313384IPR003657WRKY domain
PROSITE profilePS5081129.987320386IPR003657WRKY domain
SuperFamilySSF1182908.24E-27323384IPR003657WRKY domain
SMARTSM007742.5E-38325385IPR003657WRKY domain
PfamPF031068.7E-27327383IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEPLSVEGME EANRAAVQSC HRVLALLSNP HGHLVSNKDL AAATGEAVSK FGSLTSKLAS  60
GDGHQGHAKV RNVKRPLPII DSNLFLESPA VAAAAATRTP LPGPSTSLQL FSRYQQQQGE  120
GSGSSSKEPV RIPAHFPKRL LLDNPAVDAL PIKLVQPVSV APPAGPPHPA LPAAHLQFIQ  180
QHQSYQRYQF MQQMKIQSEM MKRSSLGDQG QQGGSGGAAG GKGVNLKFDG SNCTASSSRS  240
FLSSLSLEGS LASLDGSRAS RPFQLVSGSQ TSSNPEPGVQ RRKCTGREDG SGRCATRCHC  300
AKKRKLRIRR SIKVPAISNK VADIPADEFS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR  360
KHVERCVDDP SMLIVTYEGD HNHNRALAQP AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-193223841475Probable WRKY transcription factor 4
2lex_A3e-193223841475Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632919.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A0E0D6P50.0A0A0E0D6P5_9ORYZ; Uncharacterized protein
STRINGOMERI03G30220.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-49WRKY DNA-binding protein 39