PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g03870.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 516aa MW: 57723.3 Da PI: 10.8579

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g03870.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.7	1.8e-07	389	433	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr RR+++ ++++ L ++ + K +K +i++ A YI++L Zjn_sc00013.1.g03870.1.am.mk 389 HMMRERERREKLSQSYADLHAMVAAR-----SKGDKNSIVQSAAIYIHEL 433 889********************7.....6999999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-11	384	454	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.369	384	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-9	388	451	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-5	389	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-5	390	439	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MVGCASYPIQ LRGKQWTRHG PSRRARARLQ VDSGLNAAWA WSHSLVCPRR HPRLPIGVPV 60 SRAKLHFHPD HGSWGNRRPE FKYKGNTRRS VEFLAINRPR PRRDYPWTDL ERTAALSPSI 120 DHARASATTK GLIGLASNVR ARTYVEYLAE SRGRSNRVVA GTSSYGSHNT RCKERRRLVR 180 SCPVQSAREC EQALEIFQLD RLRGTFDLAP HLTCAPPDSI AVAASASTST ACSFSTSPGL 240 TNAKSLVYFP RRAQPPNRCL FKPAFERHQG DNQTSPLATP GPPRQRRLLA RSRREMQMDV 300 GAPYFYAGFH DEIPCFYPHG AAPAASPELL PFGFDSTSPL LEQPVAPELQ TSGTAPQGST 360 WTNVQTREEE EGRRRQPAGA VESSRGFRHM MRERERREKL SQSYADLHAM VAARSKGDKN 420 SIVQSAAIYI HELKGAREQL RRRNEELKAR ILGHDARQPS VKVDFEVDDP ASGTYCMIGA 480 LRRLRSMGVK ARGIRSSMSV GKLWTEMNVE TTVSDP

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MVGCASYPIQ LRGKQWTRHG PSRRARARLQ VDSGLNAAWA WSHSLVCPRR HPRLPIGVPV  60
SRAKLHFHPD HGSWGNRRPE FKYKGNTRRS VEFLAINRPR PRRDYPWTDL ERTAALSPSI  120
DHARASATTK GLIGLASNVR ARTYVEYLAE SRGRSNRVVA GTSSYGSHNT RCKERRRLVR  180
SCPVQSAREC EQALEIFQLD RLRGTFDLAP HLTCAPPDSI AVAASASTST ACSFSTSPGL  240
TNAKSLVYFP RRAQPPNRCL FKPAFERHQG DNQTSPLATP GPPRQRRLLA RSRREMQMDV  300
GAPYFYAGFH DEIPCFYPHG AAPAASPELL PFGFDSTSPL LEQPVAPELQ TSGTAPQGST  360
WTNVQTREEE EGRRRQPAGA VESSRGFRHM MRERERREKL SQSYADLHAM VAARSKGDKN  420
SIVQSAAIYI HELKGAREQL RRRNEELKAR ILGHDARQPS VKVDFEVDDP ASGTYCMIGA  480
LRRLRSMGVK ARGIRSSMSV GKLWTEMNVE TTVSDP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	8e-15	bHLH family protein