PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g03140.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 275aa    MW: 30042.6 Da    PI: 6.3708
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g03140.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.4e-10150198355
                                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Zjn_sc00013.1.g03140.1.am.mkhc 150 NSHSLAERLRRKKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 198
                                     58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.26E-11145202No hitNo description
SuperFamilySSF474593.01E-17145214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.447147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-17147214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7150198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-11153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MYSGQQSDQS SSANSNKEFM EAGWNSIAMH QKVDFNSGLY GFGPYSMELE ERQGLYIPST  60
GASSQNVQMR DGLSGGVKKS KGMDDCVTLL QPVGVGDQQT ENSSQPERNS VEEGKRKISP  120
KSQIKEDSSD GDGTKEDYVH IRAKRGQATN SHSLAERLRR KKISERMKLL QDLVPGCNKV  180
TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPELGFDIE QILSKQRTIH DVSTVNQIPA  240
MWEGLQIPHM NFSAGVPADS GGTNGAEAAG PASRG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3609591e-131AK360959.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981901.11e-143transcription factor bHLH49
RefseqXP_004981902.11e-143transcription factor bHLH49
RefseqXP_022678584.11e-143transcription factor bHLH49
SwissprotQ6NKN92e-49BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A3L6S4S41e-143A0A3L6S4S4_PANMI; Transcription factor bHLH49-like
STRINGSi036685m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]