PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g02680.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 876aa    MW: 94609.8 Da    PI: 7.5314
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g02680.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.51.8e-1054047733374
                          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                   + Ll+c +  ++ d   a a L +++  +s dgdp +R+a+yf  ALa+rla  +    ++    + +   s+e +  +k+
  Zjn_sc00013.1.g02680.1.am.mk 404 QSLLACSRTATA-DPGHAAAELVKVRAAVSDDGDPAERVAFYFGDALARRLAYDGRAPPSTGVDCRFA---SDELTLCYKT 480
                                   789999997666.666677778889***************************9444433333333333...899999**** PP

                          GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleet 161
                                   +++++P+ kf+hltaNqaIlea+  ++++Hi+Df+i +G+QW+ LlqaLa+Rpeg+p ++RiTgv sp  g   + +l +t
  Zjn_sc00013.1.g02680.1.am.mk 481 LNDACPYSKFAHLTANQAILEATGAATKIHIVDFGIVMGIQWAVLLQALATRPEGKPsRVRITGVPSPFLGwkPAASLAAT 561
                                   *****************************************************887769********9888999******* PP

                          GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                                    +rL++fA+ +gv+fef + + + +++l+ ++++++++E++aVn+++ql++ll +s ++ +   +vL+l ksl+P vv++ 
  Zjn_sc00013.1.g02680.1.am.mk 562 SSRLRDFAKLVGVDFEFVP-LLRPVHELDRSDFSFEHDETVAVNFMFQLYHLLGDSDETVQ---RVLRLAKSLNPSVVTLG 638
                                   *******************.599******************************77776666...9**************** PP

                          GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva.cegaerrerhetlekWrerleea 322
                                   e e+++n+  F++rf++al yy+++f+sl++ +pr+s er+ vEr ++g++i+ ++   eg er+ r+   ++W+  +e +
  Zjn_sc00013.1.g02680.1.am.mk 639 EFEVSLNRVGFVDRFANALCYYMSVFESLDVAMPRDSPERVRVERCMFGERIRRAIGpDEGVERTDRMADSKEWQTLMEWC 719
                                   ********************************************************846999******************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                   GF+pv+ls++a++qa+lll +++ +  y++ e++ +++ l W++rpL++vSaWr
  Zjn_sc00013.1.g02680.1.am.mk 720 GFEPVQLSNYAMSQADLLLWNYDsKYKYSLIEQQPAFLsLAWEKRPLITVSAWR 773
                                   ***********************7777999999999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.391376751IPR005202Transcription factor GRAS
PfamPF035146.1E-103404773IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MLGDQGGLSR GHSYGWSGIQ GAEMAPASAN APRAYCSLEL WKDGRSKPHT AEMRGAVPSR  60
PSAPCLHARR LGGPAGSSEG NARSHCWRLT EAAEAGSGSG RDPVIERRAL GLHQARTSSA  120
RSGILIDASP FHYFSVLGPS SDSGGMTKIL RGQTDLANRS SSSHFTVVAG EHRGSKAQAT  180
AFPPFGSTPQ NHIAEFLGRV PSPPFRDSAP GDGGGGRMAY MCADSGNLMA IAQQVIQQQQ  240
QQQHHQHHIP MPPPPMPTPM PPRQVPPVAG LPHGQIPAPS YGGGTWPHSE HFFADAFVGA  300
PPAADAVFSD LPGAADFDSD GWMESLIADT PVFADSDLDR LIFTTPPPPV PVPAPAVEPV  360
EAATAAHQVK AVVPSSVPQP STATPAASSS PSSLDASCSA PILQSLLACS RTATADPGHA  420
AAELVKVRAA VSDDGDPAER VAFYFGDALA RRLAYDGRAP PSTGVDCRFA SDELTLCYKT  480
LNDACPYSKF AHLTANQAIL EATGAATKIH IVDFGIVMGI QWAVLLQALA TRPEGKPSRV  540
RITGVPSPFL GWKPAASLAA TSSRLRDFAK LVGVDFEFVP LLRPVHELDR SDFSFEHDET  600
VAVNFMFQLY HLLGDSDETV QRVLRLAKSL NPSVVTLGEF EVSLNRVGFV DRFANALCYY  660
MSVFESLDVA MPRDSPERVR VERCMFGERI RRAIGPDEGV ERTDRMADSK EWQTLMEWCG  720
FEPVQLSNYA MSQADLLLWN YDSKYKYSLI EQQPAFLSLA WEKRPLITVS AWRRSVRSGR  780
PMALFCCNWV TRRVPILRAR FEANPHVDPT QAHRSPARSP RGDAHVLHPT RGSADTAPRR  840
LPAVAAALPY VSPGATRHRD GSRTTAVRHA RTDERL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.03997731375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665334.10.0scarecrow-like protein 4
SwissprotQ53K160.0SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLA0A060D4M40.0A0A060D4M4_MAIZE; GRAS transcription factor (Fragment)
TrEMBLA0A317YC810.0A0A317YC81_MAIZE; Scarecrow-like protein 4
STRINGSb01g009740.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-134GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]