PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g01110.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 742aa    MW: 79465.5 Da    PI: 6.8783
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g01110.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07303323526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                   +C++f++ G C++Gd C +aHg
  Zjn_sc00013.1.g01110.1.am.mk 303 PCPDFRK-GVCRRGDMCEYAHG 323
                                   8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002480.2385115IPR002110Ankyrin repeat
PROSITE profilePS5029716.06985160IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.2E-1686164IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.24E-1486163IPR020683Ankyrin repeat-containing domain
PfamPF127965.7E-1086154IPR020683Ankyrin repeat-containing domain
SMARTSM002480.026120152IPR002110Ankyrin repeat
PROSITE profilePS5008812.85120155IPR002110Ankyrin repeat
SMARTSM003561.1E-5298324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4302325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375303325IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4303323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4331361IPR000571Zinc finger, CCCH-type
SMARTSM0035637333356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MTNGMPISAP PAASSDGGAA AVATPRKNVA EMAKHLTIDT DDAFTGLLEL AADDDAEGLS  60
RALERAPPSA ADEAGLWYGR QKVLGHRTPL MVAATYGSLA ALRLLLSLPS VDVNRRCSPD  120
GTTALHCAAS GGSRTAVEAV KLLLGAGADA DATDDLGRRP ADVISVPPKM VDVKFALQDL  180
LGCPKFEHCV LRVVTRSTNS ISSPISSPTA EYAQSPSAAL MMNTKFADLP RVTTSEKKEY  240
PVDPSLPDIK NSVYASDEFR MYSFKIRPCS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS  300
CVPCPDFRKG VCRRGDMCEY AHGVFECWLH PAQYRTRLCK DGTSCNRRVC FFAHTTDELR  360
PLYVSTGSAV PSPRASATAA MEMAAAMGLM PGSPSSVSAV MSPFTPPMSP SGNGMPPSLG  420
WQQPNVPTLH LPGSSLQSSR LRSSLSARDM PADDYSLTQD LDSPLMNDHY SRLGSSTGNH  480
SARTKSLNPS NLDDLFSAEM VLSPRYGNAD KGAMFSPSHK TAILNQFQQQ QQALLSPINT  540
GAFSPKAMDN QQLPSHSYLL QTSLGLSSPG RMSPQCVESG SPMNSHLAAA LVKREKQQQQ  600
TMRSLSSRDL GPSAARASAL IGSPVSSSWS RWGSPSGTPD WGVNAEELGK LRRSSSFELR  660
SGGDDPDLSW VHTLVKESPP EKQVTAAEAI NSVGPSPLMP PSMSNGEDCG LNTQLDGHDQ  720
TAVIGALLDQ MQLDQPISSL AT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794600.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2T7C2E70.0A0A2T7C2E7_9POAL; Uncharacterized protein
STRINGSb01g011150.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]