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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00013.1.g01000.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YA | ||||||||
Protein Properties | Length: 207aa MW: 22266.2 Da PI: 9.4717 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 53 | 1.1e-16 | 137 | 177 | 1 | 42 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheS 42 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ k rk+ S Zjn_sc00013.1.g01000.1.sm.mkhc 137 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKVRKESKTPS 177 69****************************.99999877666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 6.0E-9 | 135 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 16.75 | 136 | 171 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.7E-12 | 138 | 178 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 141 | 161 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MESRPGGTNL VEPRGQGAAV PPGGVAMQPW WTGGGLGAVS PAVVAPGITP VGGADKAGDD 60 ARGESSEESR RSGESKDGSI SQEKNHATLQ SQMPALASAT YQYPDAYYAG MIGPYGTQPG 120 IPGLTHSRMP LPLEISEEPV YVNAKQYHGI LRRRQSRAKA ELEKKVVKVR KESKTPSKSM 180 PLQTYIYGRG RHEVMIADWQ MLCQPIH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632634.1 | 2e-74 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_015632635.1 | 2e-74 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_015632636.1 | 2e-74 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_015632637.1 | 2e-74 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_015632638.1 | 1e-74 | nuclear transcription factor Y subunit A-9 isoform X2 | ||||
TrEMBL | A0A3L6TLH3 | 8e-76 | A0A3L6TLH3_PANMI; Nuclear transcription factor Y subunit A-1-like | ||||
STRING | OMERI03G25970.1 | 5e-74 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8205 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20910.1 | 8e-17 | nuclear factor Y, subunit A9 |