PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g00690.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 897aa MW: 96804.3 Da PI: 4.0321

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g00690.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	861	881	1	21
--S---SGGGGTS--TTTTT- CS zf-CCCH 1 yktelCrffartGtCkyGdrC 21 +++++Cr ++ tG C+yG +C Zjn_sc00013.1.g00690.1.am.mk 861 PGRPNCRAYMSTGNCSYGLSC 881 689****************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.08	860	888	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.6E-5	861	881	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence Send to blast
MRQLLQLGAG ATPCRRPEAA GRRRVEEATA RLRGRRLGDD AERRSRDEVA RRPRDEVASE 60 TLRARVHEAA AVGDFGGFRP RLPAASSFSP PPSQAAVATM AGVEGEDEFR DADDGAETAP 120 LPSSSRASSP SNAKPAAAAG GFGRRLLASI RLPSSFSATI GRSASPSGPK PLEPQPPVAP 180 NLGLGLLLHQ GPNPSADGSP TFDASAGNVH LHTMVDLQKR LEEGLGEQGT KADGEDQVIG 240 HDVGVGDKLL VLVPMEEERP EKEDVADGCS GNRNVYSTKE LDKEGEQHMS VELGAAMEDQ 300 EVMEQEGATK CYTAVEDQSK NNDADKCTRD SPTAIKDDSA VEEKVATEQG CSVGTLVVAE 360 DAVAGELQEE DGLLVEGQCE DGISVHEQHK VVEECMGDEL RVAMGNCWVH NQEEAVVKNE 420 YFDAAVQDQS DNLALEQHYS DEFNDDNVVE YKDKTVEQEG AIGIEGAAKD VIVVRLQKED 480 VLVEDQGEVQ KEDVVEQCTS DVLEVAMGDG TVLDQELSVE QEGITEYFYA VVEDCSNKAS 540 IMQCASDELS AVKNGNIVEK DEALDQEGEF GILGAAENIV TEGLQAKSNM VVEGEGEDII 600 SIHYQQIVLE TCTSDEPGVS LGDIMVQDHE MTVLDQEGIT ECFAATVEDQ SNISAFDELN 660 TVKDGYFVEE KEKVMEECAI DILGSAKNDD TVGSQEKGEV EVEVVSEQGE DVVSLQDQSR 720 ITTDVGAAHD QEVVEQDVAI FVRVGTVDAI AIDAQEKPVE QYGGDESRAT KGTADEEKVV 780 DQGDLADKQY AMKGNSAVES QENEGLAVKM EGEDRISIQD QDKVVEQCTS DQCGKTMDDN 840 AADQEVRREK IRFCVGYPQR PGRPNCRAYM STGNCSYGLS CYLNHPPQVN LAPLLFL

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence Send to blast

MRQLLQLGAG ATPCRRPEAA GRRRVEEATA RLRGRRLGDD AERRSRDEVA RRPRDEVASE  60
TLRARVHEAA AVGDFGGFRP RLPAASSFSP PPSQAAVATM AGVEGEDEFR DADDGAETAP  120
LPSSSRASSP SNAKPAAAAG GFGRRLLASI RLPSSFSATI GRSASPSGPK PLEPQPPVAP  180
NLGLGLLLHQ GPNPSADGSP TFDASAGNVH LHTMVDLQKR LEEGLGEQGT KADGEDQVIG  240
HDVGVGDKLL VLVPMEEERP EKEDVADGCS GNRNVYSTKE LDKEGEQHMS VELGAAMEDQ  300
EVMEQEGATK CYTAVEDQSK NNDADKCTRD SPTAIKDDSA VEEKVATEQG CSVGTLVVAE  360
DAVAGELQEE DGLLVEGQCE DGISVHEQHK VVEECMGDEL RVAMGNCWVH NQEEAVVKNE  420
YFDAAVQDQS DNLALEQHYS DEFNDDNVVE YKDKTVEQEG AIGIEGAAKD VIVVRLQKED  480
VLVEDQGEVQ KEDVVEQCTS DVLEVAMGDG TVLDQELSVE QEGITEYFYA VVEDCSNKAS  540
IMQCASDELS AVKNGNIVEK DEALDQEGEF GILGAAENIV TEGLQAKSNM VVEGEGEDII  600
SIHYQQIVLE TCTSDEPGVS LGDIMVQDHE MTVLDQEGIT ECFAATVEDQ SNISAFDELN  660
TVKDGYFVEE KEKVMEECAI DILGSAKNDD TVGSQEKGEV EVEVVSEQGE DVVSLQDQSR  720
ITTDVGAAHD QEVVEQDVAI FVRVGTVDAI AIDAQEKPVE QYGGDESRAT KGTADEEKVV  780
DQGDLADKQY AMKGNSAVES QENEGLAVKM EGEDRISIQD QDKVVEQCTS DQCGKTMDDN  840
AADQEVRREK IRFCVGYPQR PGRPNCRAYM STGNCSYGLS CYLNHPPQVN LAPLLFL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14729	18	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29570.1	8e-08	C3H family protein