PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g00100.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 790aa MW: 85275.8 Da PI: 10.6036

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g00100.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19	2.5e-06	108	134	29	55
HHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRake 55 e++ LA+++gL+ +q+ +WF N+R ++ Zjn_sc00013.1.g00100.1.am.mk 108 EKAALAESTGLDGKQINNWFINQRKRH 134 6789********************885 PP
2	ELK	31.1	5.4e-11	36	57	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ Ll+KYsgyL+sL+ E+s Zjn_sc00013.1.g00100.1.am.mk 36 ELKNCLLNKYSGYLSSLWRELS 57 9*******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01188	2.8E-6	36	57	IPR005539	ELK domain
Pfam	PF03789	2.3E-8	36	57	IPR005539	ELK domain
PROSITE profile	PS51213	9.917	36	56	IPR005539	ELK domain
SMART	SM00389	5.6E-4	58	141	IPR001356	Homeobox domain
CDD	cd00086	7.80E-9	59	137	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.4E-22	61	138	IPR009057	Homeodomain-like
Pfam	PF05920	7.9E-11	76	133	IPR008422	Homeobox KN domain
SuperFamily	SSF46689	5.99E-8	106	142	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.361	108	137	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	112	135	IPR017970	Homeobox, conserved site
Pfam	PF17181	1.3E-12	525	605	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence Send to blast
MFEADDRSCE PGGGGSSEEG EQETDGLPET SDEDKELKNC LLNKYSGYLS SLWRELSRKK 60 KKGKLPRDAR QKLLHWWQLH YRWPYPSVRV RSSFMPPPLG LMAWCELEKA ALAESTGLDG 120 KQINNWFINQ RKRHWKPAPP PMLARADYRL NPHSGGASSS SAHHAALRGE GQYFAGGSSY 180 PRGPAPRTPE RDALHRRVSV HHLQPPGSSS SAHVQTCSFA VDRSTSVSVN ASVRPSTGSL 240 SSTAEMSSTA SVLIGPAQHL AAHVVVLNLA LAVLYPVSSP SRRPFTAAER SSVESVFTTP 300 TAAPSFPPTA PSSTTWARPA GGKAVEHLAH AHLRRDSGSV RPLEHDVALA HLVGDTPEAL 360 TLSLRSTGDW NTWRPATTRM RASCPEPQLL SHPCFFPSVL LPRERIRPRT PPIHLHARAR 420 IKRPHARAPC PYPLSEEGGS ASAQLAANFR LSSPSPPPSS LPPPFLPRAN QNFSDLKSVI 480 TKMTHTFPLL VALLLLLLLA SACTNVHATA SFVEEQSVAG IRGAIGSRPP SCEGRCRSCG 540 HCEAVQVPIS PQKLQKQKRK KLGHGTRAAA VRGATAVAGG GGGSRAVRNS YDDHSNYKPL 600 SWRCNRRAGC PAGRSCPVAA THPAMETAGH GVRTRRIGDA LSLANTRSNT GRVGIVWSRP 660 VRAPPVRSRR RPACSRPPGP LVRRESRPAA AGTLSGQLSM QLGAEREKGS GLMNRSGLSY 720 AQSLVTVLPL GHFSNRIDRH SLPPDERDAF LLHTRWGNVC AFAGCSFACV PAGAVAVQSP 780 EEYDCFGVVQ

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence Send to blast

MFEADDRSCE PGGGGSSEEG EQETDGLPET SDEDKELKNC LLNKYSGYLS SLWRELSRKK  60
KKGKLPRDAR QKLLHWWQLH YRWPYPSVRV RSSFMPPPLG LMAWCELEKA ALAESTGLDG  120
KQINNWFINQ RKRHWKPAPP PMLARADYRL NPHSGGASSS SAHHAALRGE GQYFAGGSSY  180
PRGPAPRTPE RDALHRRVSV HHLQPPGSSS SAHVQTCSFA VDRSTSVSVN ASVRPSTGSL  240
SSTAEMSSTA SVLIGPAQHL AAHVVVLNLA LAVLYPVSSP SRRPFTAAER SSVESVFTTP  300
TAAPSFPPTA PSSTTWARPA GGKAVEHLAH AHLRRDSGSV RPLEHDVALA HLVGDTPEAL  360
TLSLRSTGDW NTWRPATTRM RASCPEPQLL SHPCFFPSVL LPRERIRPRT PPIHLHARAR  420
IKRPHARAPC PYPLSEEGGS ASAQLAANFR LSSPSPPPSS LPPPFLPRAN QNFSDLKSVI  480
TKMTHTFPLL VALLLLLLLA SACTNVHATA SFVEEQSVAG IRGAIGSRPP SCEGRCRSCG  540
HCEAVQVPIS PQKLQKQKRK KLGHGTRAAA VRGATAVAGG GGGSRAVRNS YDDHSNYKPL  600
SWRCNRRAGC PAGRSCPVAA THPAMETAGH GVRTRRIGDA LSLANTRSNT GRVGIVWSRP  660
VRAPPVRSRR RPACSRPPGP LVRRESRPAA AGTLSGQLSM QLGAEREKGS GLMNRSGLSY  720
AQSLVTVLPL GHFSNRIDRH SLPPDERDAF LLHTRWGNVC AFAGCSFACV PAGAVAVQSP  780
EEYDCFGVVQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035205	2e-52	BT035205.1 Zea mays full-length cDNA clone ZM_BFb0044N12 mRNA, complete cds.
GenBank	BT040622	2e-52	BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds.
GenBank	KJ727571	2e-52	KJ727571.1 Zea mays clone pUT5431 HB transcription factor (HB110) mRNA, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4746	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	1e-33	KNOTTED-like from Arabidopsis thaliana