PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g08290.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 417aa    MW: 45092.2 Da    PI: 6.5848
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g08290.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.32.9e-86354152374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaal 81 
                                   ++lLl+cA a++s+d +laq++++ l+++as +gdp+qRl++ +++AL ar  r  ++  +  lp++ ++    +++++++
  Zjn_sc00012.1.g08290.1.am.mk  35 QQLLLHCAAALESNDVTLAQQAMWVLNNIASAQGDPNQRLTSWLLRALVARACRlCGPAAAVRLPANGAP---RERAMSVT 112
                                   699***************************************************4444444444544444...33344444 PP

                          GRAS  82 kl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skee 157
                                   +l  +++++P+++f++ + N aIl+av+ + +vH+iD+++++++QWp+L++ L++Rp+gpp lRiT+ ++  ++    + +
  Zjn_sc00012.1.g08290.1.am.mk 113 ELadYVDLTPWHRFGFTASNGAILRAVADSAAVHVIDLSVTHCMQWPTLIDVLSKRPGGPPALRITVPSARPAVpplLAVS 193
                                   4466**************************************************************999966668888888 PP

                          GRAS 158 leetgerLakfAeelgvpfefnvl...........vakrledl.........eleeLrvkpgEalaVnlvlqlhrlldesv 218
                                    ee+g rL +fA++ gv++efnv+           +                ++ +L ++ gEal+Vn++  l +++    
  Zjn_sc00012.1.g08290.1.am.mk 194 DEELGLRLVNFAKSKGVQLEFNVVktkapsaekldA------SrhdlasvlsDPPSLGLRDGEALVVNCQSWLRHVV---- 264
                                   89**********************887775544331......2333344466788889999*************998.... PP

                          GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                                     +s rd++L +v+sl+P++v+v++++ad++s+s++ r++ ++++++ lfd+l++++pr+s +r   E + +g++i++vv 
  Zjn_sc00012.1.g08290.1.am.mk 265 --PSSRDTFLYAVRSLNPRLVTVTDEDADLDSPSLASRIAGCFNFHWILFDALDTSAPRDSPWRLEHETA-VGKKIESVVG 342
                                   ..66789**************************************************************9.********** PP

                          GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     g+   er e+ ++  er+++ GF  v+++e++a+q+++ll++++  g+ v+ e++ l+l+Wk++  v +SaW+
  Zjn_sc00012.1.g08290.1.am.mk 343 VDGDG-AERSESGARLAERMRRNGFVGVRFEEEEAAQVRRLLSEHA-TGWGVKREEDMLLLTWKGHGAVYTSAWT 415
                                   ****9.****************************************.99*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.7898396IPR005202Transcription factor GRAS
PfamPF035149.9E-8435415IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEQEVRSGGG GGGGDLRAHS SVCFSGALID GPRIQQLLLH CAAALESNDV TLAQQAMWVL  60
NNIASAQGDP NQRLTSWLLR ALVARACRLC GPAAAVRLPA NGAPRERAMS VTELADYVDL  120
TPWHRFGFTA SNGAILRAVA DSAAVHVIDL SVTHCMQWPT LIDVLSKRPG GPPALRITVP  180
SARPAVPPLL AVSDEELGLR LVNFAKSKGV QLEFNVVKTK APSAEKLDAS RHDLASVLSD  240
PPSLGLRDGE ALVVNCQSWL RHVVPSSRDT FLYAVRSLNP RLVTVTDEDA DLDSPSLASR  300
IAGCFNFHWI LFDALDTSAP RDSPWRLEHE TAVGKKIESV VGVDGDGAER SESGARLAER  360
MRRNGFVGVR FEEEEAAQVR RLLSEHATGW GVKREEDMLL LTWKGHGAVY TSAWTPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-503741790475Protein SHORT-ROOT
5b3h_B7e-513741736421Protein SHORT-ROOT
5b3h_E7e-513741736421Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806480.10.0scarecrow-like protein 32
TrEMBLA0A2S3HAR10.0A0A2S3HAR1_9POAL; Uncharacterized protein
TrEMBLA0A2T7EBX30.0A0A2T7EBX3_9POAL; Uncharacterized protein
STRINGSi022117m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-103GRAS family protein