PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g08050.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 514aa    MW: 55583.3 Da    PI: 7.8195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g08050.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-19213262255
                           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr ++ +gr++AeIrd +     r +r++lg+++t+ eAa a+++a+++l+g
  Zjn_sc00012.1.g08050.1.am.mk 213 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDTPVEAALAYDRAALALRG 262
                                   7********.**********88.....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.694213270IPR001471AP2/ERF domain
SMARTSM003808.2E-32213276IPR001471AP2/ERF domain
PfamPF008479.6E-13213262IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-28213270IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21213270IPR016177DNA-binding domain
CDDcd000181.06E-26213269No hitNo description
PRINTSPR003675.2E-9214225IPR001471AP2/ERF domain
PRINTSPR003675.2E-9236252IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MARHRRGPAS VERRSGTRVR PSRKRAAAPH PTTRLRAPQE PRGAESCSGT SPRETSAPAS  60
RPHEEDTGAL VSGGGIESTA PRSDRPRGTA GVTGRGVVSS VLCRCLLLLR AVGLASQRQA  120
DRCAKPGLRS TGRRDHSLER SLRRATTTGR GYKTNRSAAA VVTAEQLPNQ PERHHHHGSV  180
AGAVADGGGG ARSSVAPAAV VGADQHQQLR GEHYRGVRKR PWGRYAAEIR DPWRKTRVWL  240
GTYDTPVEAA LAYDRAALAL RGFKARTNFG SGSGLGRYPP AHQPPRPTPN PVQAFGGLDI  300
SQPSPWHFIY VPSRRHQSME TTEPDFDGDV AATLPSTALE LRTGPRSLPF DLNEPPSLMA  360
LGSDTTEDRI PTRIGNLILD CAFKRDDACM VICCIANKRT EESIVFFSLH SGSIDDLCDE  420
LHQASPTSLP TTLRQPWANS RRPDRQPNDN TEQRGDIPND GDRPDEERPD GGTDEGIRDG  480
DEPDVDHPDG DPDDERRGGE GADEETNGGA PDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-19210269262ATERF1
3gcc_A7e-19210269262ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085231e-68AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK2423931e-68AK242393.1 Oryza sativa Japonica Group cDNA, clone: J080064G22, full insert sequence.
GenBankAP0149611e-68AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-68CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8288801e-68CT828880.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038E23, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-21ERF domain protein 12