PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g07290.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 574aa    MW: 61716.9 Da    PI: 6.3453
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g07290.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.81.2e-24378439159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +dDg+ WrKYGqKe+  se+pr Y+rCt++   gC++k++v+rs+ +p++  itY geH+++
  Zjn_sc00012.1.g07290.1.am.mk 378 MDDGFIWRKYGQKEICYSEYPRLYFRCTYKddrGCMAKRQVQRSSANPSLYLITYFGEHTCR 439
                                   59***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575121No hitNo description
PROSITE profilePS5147311.16632132IPR002902Gnk2-homologous domain
PfamPF016574.0E-846129IPR002902Gnk2-homologous domain
Gene3DG3DSA:2.20.25.801.3E-23372439IPR003657WRKY domain
PROSITE profilePS5081120.989373436IPR003657WRKY domain
SuperFamilySSF1182905.49E-23374440IPR003657WRKY domain
SMARTSM007742.5E-35378440IPR003657WRKY domain
PfamPF031065.7E-23379439IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MALRTVPRSL PLAVALVLVA CRCEGDGGVG CAKPQTATCA PVTDCDGTAF RAVVAPLLAE  60
LPSAAAATGF ASMRSAGAEG LQAFGLCFGE PDGCLACLSA SAAAVIETCG NDTRRAGVWR  120
DGCLLAYTDG PRDQAVVDLA MALADPKEQS FWKKALSILY YALAAVGLVA VVLLLCLSIA  180
AFAIAQSLVR HTAAGRVAAA GHGGEGVTAY FVATDGRSPI WSVGVQARFY YYLVGLRARP  240
FRNQPPPYHG AKGSQGFGKE GEALWWSLPQ GEHRGSRALS NSDESQDLML GGRGRDSAAV  300
LQVLLGRHPA VPTADEMPDG ALRDLTEQIL RCCDRALAAL RSASRKRSLA NAHLAPSSKR  360
TRVSCGEKGR RVEKQATMDD GFIWRKYGQK EICYSEYPRL YFRCTYKDDR GCMAKRQVQR  420
SSANPSLYLI TYFGEHTCRR HDTEPPAPAP CVINFGSSTC GDGHQPNVLP WRPSCGDDGP  480
VVSETSDLCN SQEEMLAALM EQSTPVSEQV GKGSPGWDNL DGCLDWEFAD DDSSFDLMMR  540
TTGRADDADE KQNDYWLQDV HAAMLNRVAL VLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-21378439869OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.17e-21WRKY DNA-binding protein 62