 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zjn_sc00012.1.g04390.1.am.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
NAC |
| Protein Properties |
Length: 393aa MW: 42255.4 Da PI: 8.2548 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00012.1.g04390.1.am.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 159.6 | 1.2e-49 | 43 | 168 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82
+pGfrFhPt+eel+ +yL++kveg+++++ + i+++d+y+++Pw+Lp+++ + kew+f+++rd+ky++g+r+nr+t+sgy
Zjn_sc00012.1.g04390.1.am.mk 43 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-DLIADLDLYRFDPWELPAMAVMGGKEWFFYVPRDRKYRNGDRPNRVTASGY 122
79***************************.99***************7767789*************************** PP
NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
Wkatg d+ + ++++ +glkktLvfy+g+apkg++++W+m+eyrl
Zjn_sc00012.1.g04390.1.am.mk 123 WKATGADRMIRGEDNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 168
********************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 393 aa
Download sequence Send
to blast |
MSRDLEDGHG GAVAAGGGAG SSEASVGRGA GDGGDSHDND LVMPGFRFHP TEEELIEFYL 60
RRKVEGRRFN VDLIADLDLY RFDPWELPAM AVMGGKEWFF YVPRDRKYRN GDRPNRVTAS 120
GYWKATGADR MIRGEDNRPI GLKKTLVFYS GKAPKGVRSS WIMNEYRLPP PAADADPLTH 180
KSEISLCRVY KRSGIDDGHG QPSSSTQASS GRRTRTSRHM STSPASTPLS HIQHPGSFHL 240
LQGECSSVSP PTIMDPLLAA HNVPQLLQPP RPRALTGNSL AAGASVPTEG AAILASTYSL 300
LNMATVPMGS SRPVDELSTL VGHSQAYANH LSAATGSHFV LPLPSPQPTP QVAPLGALPI 360
AAPPLASVAD KLSWDWNPVP DTTARDYSNS SFK
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-55 | 44 | 193 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-55 | 44 | 193 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-55 | 44 | 193 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-55 | 44 | 193 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-55 | 44 | 193 | 19 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 1e-55 | 44 | 193 | 19 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT060478 | 0.0 | BT060478.1 Zea mays full-length cDNA clone ZM_BFb0004F04 mRNA, complete cds. |
| GenBank | HQ858762 | 0.0 | HQ858762.1 Zea mays clone UT1609 NAC transcription factor mRNA, partial cds. |
