PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g03360.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 652aa    MW: 69810.5 Da    PI: 10.5947
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g03360.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.3e-32376434159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK vk+s fprsYYrCt++ C+vkk+v+r a+d++vv++tYeg Hnh+
  Zjn_sc00012.1.g03360.1.am.mkhc 376 LDDGYRWRKYGQKAVKNSAFPRSYYRCTHHACNVKKQVQRLAQDTSVVVTTYEGVHNHP 434
                                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-33362434IPR003657WRKY domain
SuperFamilySSF1182903.4E-28368435IPR003657WRKY domain
PROSITE profilePS5081129371436IPR003657WRKY domain
SMARTSM007743.9E-39376435IPR003657WRKY domain
PfamPF031061.1E-25377434IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MTRGLSYRST CTFLVSISSF PSSKTFRMIH ASIIPRSTSP KSRTTSAKTS RPRTSTRRAG  60
ASSNCASPGA EGSIATSTIS LIHLHTHHGA GWNGCVLTTD ANDLVFATDA GAAIVSRISS  120
AHPREHLSIS PCQITCTPSM GPQTVEWLET ARVRSTNLLP GLDLMIVSRW PITVWRWRDV  180
VALWLLAWLL PHAVLTYDSS PHRARLLERS ARLPNAFHLP ASSVFPLTGT QSPSPMEDSL  240
RGAHQHQLSE FLALTSTGAA PRPQEKQQGS SNVAATHLAP TGAVSCSPLV DWTSLLLSSA  300
PGLPQSQKHA AADACEQENA GGGEGSSTVT TATASGGGSS SCKEMVKAGR KGGGRGKKKA  360
SRPRFAFQTR SESDVLDDGY RWRKYGQKAV KNSAFPRSYY RCTHHACNVK KQVQRLAQDT  420
SVVVTTYEGV HNHPCEKLME ALNPILRQLQ LLTQLGFRPA ANAVPAPDAL ASDPPSTPAP  480
SLLRRRGCPR PDALTVSVPI RPHPRLSLPP PFPAPAAAST SIHSCHRLNP SQIKAPERAP  540
AGKPASISDK WLPPEKPGPF RAQSSPRTEP SVHRRPPHSF ALATAEGVLA PSRPPRDIAG  600
QEGAREASAA LICPLVRGLN KSLYPCLSSP LLPSCMVRPF PCTTDARPGW PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-24366433774Probable WRKY transcription factor 4
2lex_A4e-24366433774Probable WRKY transcription factor 4
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9580741e-110EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6258522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.12e-48WRKY DNA-binding protein 43