PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00012.1.g01600.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 327aa MW: 35981.8 Da PI: 9.1196

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00012.1.g01600.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	82.1	1.1e-25	98	247	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..............kvkaeekewyfFskrdk 66 lp+G++F+Ptd+ l+ e+L+ k++ ++ +l+ ++e+ ++ ++L + +v+++ +fF++ +k Zjn_sc00012.1.g01600.1.am.mk 98 LPAGVKFDPTDQVLL-EHLEGKARPESRKLHPLVDEFiPTIEGGGRHLLHasqeasryirmhvaSVSKDGLVRHFFHRPSK 177 799*******999.99**9997775445554444444445553224456666665433332333366**** PP NAM 67 kyatgkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +y+tg+rk+r+++ + +W++tgk+++vl+ +g++ g kk+Lv+y g+++k+ekt+Wvmh+y+l Zjn_sc00012.1.g01600.1.am.mk 178 AYTTGTRKRRKVHrddedggETRWHKTGKTRPVLA-NGSVRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 247 ******7444555555778********.999*******6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-29	91	266	IPR003441	NAC domain
PROSITE profile	PS51005	27.014	98	266	IPR003441	NAC domain
Pfam	PF02365	1.5E-13	99	247	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEKSLGVDEY GGVRSQLFLR RDRMTWCNGF TDVRAAAETP ASVVAATAGK MAAASLAVLI 60 EMCPSCGHRA RTAAHMHESP TLPPDDMLRE MTTTIQDLPA GVKFDPTDQV LLEHLEGKAR 120 PESRKLHPLV DEFIPTIEGG GRHLLHASQE ASRYIRMHVA SVSKDGLVRH FFHRPSKAYT 180 TGTRKRRKVH RDDEDGGETR WHKTGKTRPV LANGSVRGYK KILVLYTNYG KQRKPEKTNW 240 VMHQYHLGAD EAERDGELVV SKVFFQTQPR QCGSATAAAK DPAGAANNNP VISGGALAGH 300 TVLREANVFG VLLQSSDDRD GLALDLD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT017099	1e-175	BT017099.1 Zea mays clone EL01N0361H10.c mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001308424.1	1e-116	uncharacterized protein LOC100275733 isoform 1
Swissprot	O49459	6e-98	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1E5VZX8	1e-122	A0A1E5VZX8_9POAL; NAC domain-containing protein 73
STRING	GRMZM2G031200_P01	1e-116	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3075	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	5e-93	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]