 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zjn_sc00012.1.g01420.1.am.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
ERF |
| Protein Properties |
Length: 254aa MW: 27082.9 Da PI: 5.1994 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00012.1.g01420.1.am.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 51.3 | 3e-16 | 116 | 159 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
y+GVr+++ +g+++AeIrd + ng +r++lg+f taeeAa a+++
Zjn_sc00012.1.g01420.1.am.mk 116 SYRGVRRRP-WGKFAAEIRDTRRNG--ARVWLGTFATAEEAALAYDR 159
69*******.**********54455..******************96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 254 aa
Download sequence Send
to blast |
MAIGGQGSGS NQPNEGSNIL ENVWATIMTE CSAATPASSS TAVSSSEAGE PKPEKILQRL 60
PSLGRWISMG AEEWDELLSG TTPDASGEEL LVSSPPALKH EDRASSRAAP VPTCKSYRGV 120
RRRPWGKFAA EIRDTRRNGA RVWLGTFATA EEAALAYDRE VAAAGSGGSE ATRVLRRRRR 180
RTGAADAASS TRSACSDQTM VSFAWGSGQE GGMMTERSSS DAGAIAFEDI GGECWDYLFA 240
PLWGDDILIR HQHS
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 172 | 180 | RVLRRRRRR |
| 2 | 176 | 181 | RRRRRT |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC124143 | 5e-32 | AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence. |
| GenBank | AP014961 | 5e-32 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012613 | 5e-32 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
