PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00012.1.g01370.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 395aa MW: 41626.4 Da PI: 7.1777

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00012.1.g01370.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107	9.6e-34	188	245	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d vv++tYeg+H+h+ Zjn_sc00012.1.g01370.1.am.mk 188 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSLQDAAVVITTYEGKHTHP 245 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.1E-35	172	247	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-29	179	247	IPR003657	WRKY domain
PROSITE profile	PS50811	31.835	182	247	IPR003657	WRKY domain
SMART	SM00774	3.9E-40	187	246	IPR003657	WRKY domain
Pfam	PF03106	1.0E-26	188	245	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MSDARHDHGG HQRHLSGDFQ FHDDLASLFA QRPEAGTHPW FTDYLQASAL MLMDYDPFAG 60 EFDMPTVEEV KRELGMDAAA ASGAAGMLGS GGATSSTAPP LTPNSMSLSS TSSEACGTAG 120 AGAGEESAGK CKKEDEGGDS KDGSADKGDR DMDHKNKKGA AKGKGEGEKR PRQPRFAFMT 180 KSEVDHLEDG YRWRKYGQKA VKNSPFPRSY YRCTTQKCPV KKRVERSLQD AAVVITTYEG 240 KHTHPIPATL RGSTHLLAGH HPHFHLPPPP PVGGAGFAYG RPCATAFDAL GLLQPQPQQH 300 HAIQQLVSGG AGCAAAGVQP QQVNAGAMAS RHAAADQLGL ASLVGTVAGG AASATTAATS 360 SIVPLRMQHF MAQDYAGLLQ DMLPSFIQND GGNNP

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MSDARHDHGG HQRHLSGDFQ FHDDLASLFA QRPEAGTHPW FTDYLQASAL MLMDYDPFAG  60
EFDMPTVEEV KRELGMDAAA ASGAAGMLGS GGATSSTAPP LTPNSMSLSS TSSEACGTAG  120
AGAGEESAGK CKKEDEGGDS KDGSADKGDR DMDHKNKKGA AKGKGEGEKR PRQPRFAFMT  180
KSEVDHLEDG YRWRKYGQKA VKNSPFPRSY YRCTTQKCPV KKRVERSLQD AAVVITTYEG  240
KHTHPIPATL RGSTHLLAGH HPHFHLPPPP PVGGAGFAYG RPCATAFDAL GLLQPQPQQH  300
HAIQQLVSGG AGCAAAGVQP QQVNAGAMAS RHAAADQLGL ASLVGTVAGG AASATTAATS  360
SIVPLRMQHF MAQDYAGLLQ DMLPSFIQND GGNNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-26	178	248	8	78	Probable WRKY transcription factor 4
2lex_A	1e-26	178	248	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961203.1	1e-128	probable WRKY transcription factor 28
TrEMBL	A0A1E5VKW3	1e-132	A0A1E5VKW3_9POAL; Putative WRKY transcription factor 71
STRING	Si022220m	1e-127	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	6e-47	WRKY DNA-binding protein 71