PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g01370.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 395aa    MW: 41626.4 Da    PI: 7.1777
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g01370.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.6e-34188245259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d  vv++tYeg+H+h+
  Zjn_sc00012.1.g01370.1.am.mk 188 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSLQDAAVVITTYEGKHTHP 245
                                   8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-35172247IPR003657WRKY domain
SuperFamilySSF1182903.14E-29179247IPR003657WRKY domain
PROSITE profilePS5081131.835182247IPR003657WRKY domain
SMARTSM007743.9E-40187246IPR003657WRKY domain
PfamPF031061.0E-26188245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSDARHDHGG HQRHLSGDFQ FHDDLASLFA QRPEAGTHPW FTDYLQASAL MLMDYDPFAG  60
EFDMPTVEEV KRELGMDAAA ASGAAGMLGS GGATSSTAPP LTPNSMSLSS TSSEACGTAG  120
AGAGEESAGK CKKEDEGGDS KDGSADKGDR DMDHKNKKGA AKGKGEGEKR PRQPRFAFMT  180
KSEVDHLEDG YRWRKYGQKA VKNSPFPRSY YRCTTQKCPV KKRVERSLQD AAVVITTYEG  240
KHTHPIPATL RGSTHLLAGH HPHFHLPPPP PVGGAGFAYG RPCATAFDAL GLLQPQPQQH  300
HAIQQLVSGG AGCAAAGVQP QQVNAGAMAS RHAAADQLGL ASLVGTVAGG AASATTAATS  360
SIVPLRMQHF MAQDYAGLLQ DMLPSFIQND GGNNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26178248878Probable WRKY transcription factor 4
2lex_A1e-26178248878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961203.11e-128probable WRKY transcription factor 28
TrEMBLA0A1E5VKW31e-132A0A1E5VKW3_9POAL; Putative WRKY transcription factor 71
STRINGSi022220m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.16e-47WRKY DNA-binding protein 71