PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g01260.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 571aa    MW: 60765.6 Da    PI: 7.5554
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g01260.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.5e-30219277259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dg++WrKYGqK+ kg+++pr+YYrCt+a gC+v+k+v+r+aed +v+++tYeg+Hnh+
  Zjn_sc00012.1.g01260.1.am.mk 219 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCSVRKQVQRCAEDRTVLITTYEGSHNHP 277
                                   7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-33203279IPR003657WRKY domain
SuperFamilySSF1182902.62E-27211279IPR003657WRKY domain
PROSITE profilePS5081129.861213279IPR003657WRKY domain
SMARTSM007741.4E-35218278IPR003657WRKY domain
PfamPF031063.1E-26220277IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MTMSMRAEIK EVLVLFWVFS SSSSPLCGQL ESTKVELRQS KEEIQRLRKI VSDLSARYQS  60
LHAHFVAFMQ QQRNLEVPRP EQQLNLDPEK KEQDASPLPK QFISLDVGAD AAPSPGSSLA  120
GSAVPPQLMD YSPGGTGTGN GGGRMPLPTF DQHRHRLHER VGSPEEAPPP QHVTQGWLAS  180
PSKVPKFLPA KTPEAVPEAA TMRKARVSVR ARSEAAMISD GCQWRKYGQK MAKGNPCPRA  240
YYRCTMAAGC SVRKQVQRCA EDRTVLITTY EGSHNHPLPP AAMAMASTTA AAASMLLSGS  300
MPSADGSLMA GSNFLARAVL PCSSSVATIS ASAPFPTVTL DLTQPAPPAA SSSCALAEPA  360
QLKAALAEAA RPVQLPQLFG QKLYDHGKLS AVQAAAGVKA TEGGAIADTV SAAAAITSDP  420
NFTAVLAAAI TSYIGSSGAG GSSGTVQPMA SGGADNSYAD FERSGWQHDT EGAESISRFR  480
CPSLRPGHAF DINPVHVARS TVPWSLLNRH TVEERRADLV TERTDEVEYC GRLDRPAPFG  540
ASAVEYNAAW QSSASERELL AAFTIVDQVY H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-21209279877Probable WRKY transcription factor 4
2lex_A4e-21209279877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209861e-139AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149611e-139AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963595.11e-146WRKY transcription factor 42
SwissprotQ9XEC31e-101WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A0E0L5U91e-153A0A0E0L5U9_ORYPU; Uncharacterized protein
STRINGOPUNC05G23690.11e-154(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-59WRKY family protein