PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g08140.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 490aa    MW: 54270.2 Da    PI: 7.0417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g08140.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-08299341754
                                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   + E++RR+r+ +++  L  l+P++     +K + a++   A+eYI++L
  Zjn_sc00011.1.g08140.1.am.mk 299 KKEKQRRQRLGEKYTALMLLIPNR-----TKDDRATVISDAIEYIQEL 341
                                   57*********************9.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.429292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-5298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-6299341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-7301354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.24E-10301363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.48E-6301341No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MPPLTLDCFR SRSRPLSLLC PCPRLPCASS QRWSHCLRRH SNASACGCDT REPASAEKKR  60
AAPSHHQLSS QAKARHATCV ADEGERERWG KGMGNGIDSN ELQQSEDVSE SWPRGWQMRE  120
RWKKRMGVGQ IHELHQLERA VSILEQDYEE RACELLTGHD SLDLDAGQPQ LTASSVATIP  180
TELSFQLFHS LDADAAVPPP TVDYYFGGAD HQSAVQYEPL APAGSLHTTM LRDYYPMGEP  240
YLRGTTAGTL VFGAPDDESV AYMDGTFQSS PPPRAKGGRK RSRALSGGFH GGLVNGVEKK  300
EKQRRQRLGE KYTALMLLIP NRTKDDRATV ISDAIEYIQE LGRTVEELTL LVEKKRRRRE  360
LQGDVLDAAP AVVAAGTEPE SSEGEVVAPT PAVQQQPIRS TYIQRKSKDA FIDVRIVEEE  420
VNIKLTKRRR DGCLAAASRA LDELRLDLVH LSGGKIGDCH IYMFNTKIHP GSSVFASAVA  480
SRLMEVVDEY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277283GRKRSRA
2353358KKRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815629.11e-170transcription factor TIP2-like
SwissprotQ5JNS01e-145TIP2_ORYSJ; Transcription factor TIP2
TrEMBLA0A1E5UWC61e-177A0A1E5UWC6_9POAL; Transcription factor TIP2
STRINGPavir.Eb01270.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.27e-31bHLH family protein