PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00011.1.g05930.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 687aa MW: 72904.6 Da PI: 6.8236

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00011.1.g05930.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.7	2e-31	254	309	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++ LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Zjn_sc00011.1.g05930.1.am.mk 254 KARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 309 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.69	251	311	IPR017930	Myb domain
SuperFamily	SSF46689	7.17E-17	251	312	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.5E-28	252	312	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.4E-26	254	309	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-6	256	307	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009266	Biological Process	response to temperature stimulus
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010452	Biological Process	histone H3-K36 methylation
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:1903507	Biological Process	negative regulation of nucleic acid-templated transcription
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MSSSSPSDLT LDYKPNGGAY AAIPKQQQAP PLVDGHHLTT EPASQKLREF LARLEEERLK 60 IDAFKRELPL CMQLLNHAME AYKQQLEAYQ MGSQQAVATR PLVLEEFIPL KNIGIDAVTD 120 KPGNPPSEKA TWMESAQLWN GPAADTAAKG PQTPKERSEH PLPIDTLGTL DGRRSGGGGG 180 AFLPFAKDKS AVPDAATALP ELALAPAEKD AVAEVDRKSP YLDAAGGGNN GVLGALRDTQ 240 NGGASPAPPQ THRKARRCWS PELHRRFVNA LQILGGAQVA TPKQIRELMK VDGLTNDEVK 300 SHLQKYRLHT RRPPAPPNPA TAAPQLVVLG GIWVPPEYAA QGAAPAIYGA HPATQPHYTA 360 AVAAQEYYPS PAAVHHLQHH PATAMLHRAA AAPPPPQAYK AAMAGSPPQS EGRSSAGGGS 420 VGAGGGGSGR ERSESIEEEG EDQEREDDDD DEEQEMNAAK ADAGDEAAGA GAVNSRATAN 480 CNVNCPSQPP CSPTTSAAKE INGDEPKRIG SAVARSNAPP PLCSRELIVV GATCHGLPRN 540 DSCRVVSAIV VYIKAHTDVM PYVSMVMLGS RARRPCSRAS RRAPGTAHRR RPVREEGWYM 600 DARGKTHALR EWAVTLEEDI GLAQGGRRVR AAAAELQDHQ QDGQDAAQEA AAPRVRGVRA 660 AAVHDMSSAN FEVELVSGVN EGAALHR

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MSSSSPSDLT LDYKPNGGAY AAIPKQQQAP PLVDGHHLTT EPASQKLREF LARLEEERLK  60
IDAFKRELPL CMQLLNHAME AYKQQLEAYQ MGSQQAVATR PLVLEEFIPL KNIGIDAVTD  120
KPGNPPSEKA TWMESAQLWN GPAADTAAKG PQTPKERSEH PLPIDTLGTL DGRRSGGGGG  180
AFLPFAKDKS AVPDAATALP ELALAPAEKD AVAEVDRKSP YLDAAGGGNN GVLGALRDTQ  240
NGGASPAPPQ THRKARRCWS PELHRRFVNA LQILGGAQVA TPKQIRELMK VDGLTNDEVK  300
SHLQKYRLHT RRPPAPPNPA TAAPQLVVLG GIWVPPEYAA QGAAPAIYGA HPATQPHYTA  360
AVAAQEYYPS PAAVHHLQHH PATAMLHRAA AAPPPPQAYK AAMAGSPPQS EGRSSAGGGS  420
VGAGGGGSGR ERSESIEEEG EDQEREDDDD DEEQEMNAAK ADAGDEAAGA GAVNSRATAN  480
CNVNCPSQPP CSPTTSAAKE INGDEPKRIG SAVARSNAPP PLCSRELIVV GATCHGLPRN  540
DSCRVVSAIV VYIKAHTDVM PYVSMVMLGS RARRPCSRAS RRAPGTAHRR RPVREEGWYM  600
DARGKTHALR EWAVTLEEDI GLAQGGRRVR AAAAELQDHQ QDGQDAAQEA AAPRVRGVRA  660
AAVHDMSSAN FEVELVSGVN EGAALHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-13	254	307	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-13	254	307	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-13	254	307	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-13	254	307	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250\|UniProtKB:Q6Z869}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00261	DAP	Transfer from AT2G03500	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT086572	1e-147	BT086572.2 Zea mays full-length cDNA clone ZM_BFc0184N23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819732.1	0.0	transcription factor NIGTH1
Swissprot	Q5VRW2	1e-135	NOH1_ORYSJ; Transcription factor NIGTH1
TrEMBL	A0A3L6SLE0	0.0	A0A3L6SLE0_PANMI; Putative transcription factor GLK2
STRING	Si001230m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9773	33	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-65	G2-like family protein

Publications ? help Back to Top
Kamrul Huda KM, et al. Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins. Plant Physiol. Biochem., 2014. 82: p. 229-38 [PMID:24992889]