PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g03120.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 382aa    MW: 40324.1 Da    PI: 5.8091
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g03120.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.1e-18263297135
                            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Zjn_sc00011.1.g03120.1.sm.mkhc 263 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 297
                                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-691342IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.104.2E-15257294IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.571257293IPR000679Zinc finger, GATA-type
SMARTSM004013.6E-18257307IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-15259320No hitNo description
CDDcd002021.53E-14262309No hitNo description
PROSITE patternPS003440263288IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15263297IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEAAEATEYG HYGGAGRERK VAGCGGDLFA VDDLLVLPYD DEEEGDGEAP VVDAAGGGGT  60
VKVKEEGGFG NLSADSSTVT TALDSCSNSF SGLADGDFSG ELCEPYDQLV ELEWLSNYMG  120
EGEDTFATED LQKLQLINGL SAGGFSSSAA KVSPAPVASA TQQAGRMFLP EAPVPAKART  180
KRYRAVPGNW SSRHLVLPPT PPSPPSPTSM AISPAESGIS VQAFQAAKKP SKMKDAPQAQ  240
PPSSAPAQSS GSGSAASAEG RRCLHCETDK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE  300
YRPAASPTFV MSKHSNSHRK VLELRRQKEM QHGHQPHVMA GNGAGGLMHM QNPLLFDGQP  360
IMAGDDFLVP QHLGPDYRRQ LI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609504e-86BT060950.1 Zea mays full-length cDNA clone ZM_BFb0075O21 mRNA, complete cds.
GenBankEU9631214e-86EU963121.1 Zea mays clone 257954 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969927.11e-157GATA transcription factor 12
TrEMBLK3XIL31e-156K3XIL3_SETIT; GATA transcription factor
STRINGSi001735m1e-157(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.19e-63GATA transcription factor 12