PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00011.1.g01280.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 468aa MW: 48616 Da PI: 6.4305

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00011.1.g01280.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.2	4.6e-06	308	348	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L Zjn_sc00011.1.g01280.1.am.mk 308 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 348 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.449	299	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-12	305	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.55E-10	305	353	No hit	No description
SuperFamily	SSF47459	6.41E-13	305	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-9	308	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MGFETSPSSR PCPPINAAPR NLCASRLIGF PPLGGGGAAM DATYGWAGAG QHVDDYFSRQ 60 VGCARFEMDD AFLGACFGQQ QCDGISGAGG DAGTCQVNSD FGGTGGCPAG VDSDPLAIMS 120 PGTGDVFDAS LLDAALAFSR ELGDVCGAVS NGAMFSSYSG TTGGNMSSGE SNNYSGGSHD 180 AEVVSPTTAP PPSFPHASSE QALHPKRKVT NEYPSIITPT TEPPPAMPFP RPGGGKRRAA 240 TTSISFGRDP GARYEPDMEA MAQVKEMIYR AAAMRPVILG PEVVAAAAAE KPRRKNVRIS 300 SDPQTVAARL RRERVSERLR VLQKLVPGGS KMDTASMLDE AASYLKFLKS QVQALETLGT 360 TTTCTNSSST SRPSQQHYSY HNSSNPGFLG FARSSNISHG GAGGEEERTA STSGPAGYHK 420 AFTLVGLSDA KRHSFGGRLT DAYPDPHAMH ESLCGVTTGD DCTAACAS

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MGFETSPSSR PCPPINAAPR NLCASRLIGF PPLGGGGAAM DATYGWAGAG QHVDDYFSRQ  60
VGCARFEMDD AFLGACFGQQ QCDGISGAGG DAGTCQVNSD FGGTGGCPAG VDSDPLAIMS  120
PGTGDVFDAS LLDAALAFSR ELGDVCGAVS NGAMFSSYSG TTGGNMSSGE SNNYSGGSHD  180
AEVVSPTTAP PPSFPHASSE QALHPKRKVT NEYPSIITPT TEPPPAMPFP RPGGGKRRAA  240
TTSISFGRDP GARYEPDMEA MAQVKEMIYR AAAMRPVILG PEVVAAAAAE KPRRKNVRIS  300
SDPQTVAARL RRERVSERLR VLQKLVPGGS KMDTASMLDE AASYLKFLKS QVQALETLGT  360
TTTCTNSSST SRPSQQHYSY HNSSNPGFLG FARSSNISHG GAGGEEERTA STSGPAGYHK  420
AFTLVGLSDA KRHSFGGRLT DAYPDPHAMH ESLCGVTTGD DCTAACAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	295	EKPRRKN
2	290	295	KPRRKN
3	308	313	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355455	1e-101	AK355455.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020N05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818336.1	1e-164	transcription factor LATE FLOWERING-like
Swissprot	A0A0P0WQ90	4e-50	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	A0A2T7DHT3	1e-164	A0A2T7DHT3_9POAL; Uncharacterized protein
STRING	Pavir.Eb02901.1.p	1e-157	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	6e-27	bHLH family protein

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]