PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g01200.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 233aa    MW: 25396.8 Da    PI: 10.6167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g01200.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.2e-1489135455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Zjn_sc00011.1.g01200.1.sm.mk  89 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIRELE 135
                                   799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.0685134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-1388139No hitNo description
Gene3DG3DSA:4.10.280.108.2E-1788138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-1788142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-1189135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1591140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRIFGKDLSR CGRLLPAADD QASWAPTQLG RGQTSPDRKK QAVVDPKPPG PHRSVDFTKQ  60
EQNMQAGVEE RKPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA VVPKISKMDK  120
ASLLSDAIAY IRELEDRLRG APAESPPAVE VKTTSLDEVA LRVTTPLHAH PASRVFRAVR  180
DAELGVVSSD LAVADDAVTH TLVLRSTGPE RLTAEAVLAA LSRGTGGGGT PSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-2883167282Transcription factor MYC2
5gnj_B5e-2883167282Transcription factor MYC2
5gnj_E5e-2883167282Transcription factor MYC2
5gnj_F5e-2883167282Transcription factor MYC2
5gnj_G5e-2883167282Transcription factor MYC2
5gnj_I5e-2883167282Transcription factor MYC2
5gnj_M5e-2883167282Transcription factor MYC2
5gnj_N5e-2883167282Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17078RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456225.11e-80transcription factor bHLH13
SwissprotA0A3Q7ELQ24e-53MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A3L6R1322e-83A0A3L6R132_PANMI; Transcription factor bHLH13-like
STRINGSb03g032420.15e-80(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.13e-42ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]