PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00010.1.g01510.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 531aa    MW: 56176.5 Da    PI: 7.1561
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00010.1.g01510.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS194.95e-601545262374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal...ppsetseknsseel 78 
                                   ++lL  cA av++g+l+++q+l   l elas +gd+++Rlaa+ ++AL +rl    +   ++++   p+   ++  ++ e 
  Zjn_sc00010.1.g01510.1.am.mk 154 EQLLNPCAAAVEAGNLSRVQHLFYVLGELASFSGDANHRLAAHGLRALLRRLPAaVGVAAAATVrvpPCVCPTPAFVAAEP 234
                                   689*************************************************98322222333311133333333344444 PP

                          GRAS  79 aalkl....fsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgsp 150
                                     +++    f+evsP++ + + +aN aI +a+++    + +H++D+++s+G+QWp+Ll++L+  +  + pps+R+T+ g+ 
  Zjn_sc00010.1.g01510.1.am.mk 235 RLFRAslikFHEVSPWFALPNALANAAIAQAAARGvepRPIHVVDLGVSHGVQWPTLLESLTRLSgtRVPPSVRLTVAGPT 315
                                   444445689**********************998778899*********************988755669*********97 PP

                          GRAS 151 esg.....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserde 226
                                   ++       +         L ++A+++++++ +    a +le++  +++ + pgEal+V+l+++l ++       ++er++
  Zjn_sc00010.1.g01510.1.am.mk 316 ATPlvpfsLSPPGYDFSPHLLRYAKSINLQLAIGR--AASLESV--HSF-TTPGEALVVCLQFHLGHVA------ADERTD 385
                                   6669888867777889999*************998..3444444..666.779*************998......556899 PP

                          GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerr 306
                                   +Lk v++l+P++vv++e +a  ++++ + +f+  le+ + +++s++a +  ++ +er+ +E+e  g ++   va eg+e  
  Zjn_sc00010.1.g01510.1.am.mk 386 ILKKVRGLNPELVVLSELDAV-GDGTVAGEFAARLEMLWRFLESTSAAFKGKDgDERRLLEAE-AGTSVAAGVAGEGRE-- 462
                                   ****************99975.6999*******************888877776999999999.9***********998.. PP

                          GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgWkdrpLvsvSaWr 374
                                           Wr+r+ +aGF++++++++a+++ak+llrk++ +++++    ++ g++ l Wk++p+ ++S Wr
  Zjn_sc00010.1.g01510.1.am.mk 463 -------AWRDRMAAAGFEEAAFDDEAVESAKSLLRKYDgGWEMSAPaaSSAGAVALRWKGQPVSFCSLWR 526
                                   .......9*******************************55554443546678888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.837127503IPR005202Transcription factor GRAS
PfamPF035141.7E-57154526IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MHASSCKLVY MKAMNCREQE HQELAATTSN NGLDWLDDSI SFLTADIDFG GWWDTTPAEA  60
QQDDISSVVA QTLSPPAPLA TTSAPLAQAS SSTASPAVSS PSEPSSKKRK SPVHRASGQG  120
GSNQRRRAEQ DRAGGKKGGA KGGAGSDRDM RWAEQLLNPC AAAVEAGNLS RVQHLFYVLG  180
ELASFSGDAN HRLAAHGLRA LLRRLPAAVG VAAAATVRVP PCVCPTPAFV AAEPRLFRAS  240
LIKFHEVSPW FALPNALANA AIAQAAARGV EPRPIHVVDL GVSHGVQWPT LLESLTRLSG  300
TRVPPSVRLT VAGPTATPLV PFSLSPPGYD FSPHLLRYAK SINLQLAIGR AASLESVHSF  360
TTPGEALVVC LQFHLGHVAA DERTDILKKV RGLNPELVVL SELDAVGDGT VAGEFAARLE  420
MLWRFLESTS AAFKGKDGDE RRLLEAEAGT SVAAGVAGEG REAWRDRMAA AGFEEAAFDD  480
EAVESAKSLL RKYDGGWEMS APAASSAGAV ALRWKGQPVS FCSLWRSACN V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-2715152685473Protein SHORT-ROOT
5b3h_B3e-2715152631419Protein SHORT-ROOT
5b3h_E3e-2715152631419Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318969.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A1E5VYC70.0A0A1E5VYC7_9POAL; Nodulation-signaling pathway 1 protein
STRINGGRMZM2G110067_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.12e-73GRAS family protein