PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00010.1.g00500.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 341aa    MW: 36555.8 Da    PI: 8.4858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00010.1.g00500.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12140186455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    h ++Er+RR++i+++f eL  ++P +     +K++ a+iL +A+ Y+k+Lq
  Zjn_sc00010.1.g00500.1.sm.mk 140 EHIMAERKRREKIRQRFVELSAVIPGL-----TKMDNATILYRATSYVKELQ 186
                                   599***********************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.665136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-15139205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-10140186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-16140201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-13141190No hitNo description
SMARTSM003536.0E-13142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEDMTEFLQW ATNALQQEHS APPVADCASP SVLLGVPEEQ RSIMGAPATN RWIPGGTTDG  60
SLVGHIAVPA APMVAPSTNM AGNAPTSSLV GGNTSASWSF GSATGRILSE LAYRSQPTRT  120
ACLTNPWSSA SFAPPPYARE HIMAERKRRE KIRQRFVELS AVIPGLTKMD NATILYRATS  180
YVKELQESIK RREAAGSALS GSMDTIVPTP RHATTAGPTK PLPDVQAHFS GKSVMVRILC  240
ENGKGVIVKV LKEVEEAHLS IVDANFMAFS ACTLIITITA KLLEGFIITA DEIISRLNFR  300
PSETAPADGP GAPTGNGYCR LATARGHRPL SWFEGKNRMV D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149ERKRRE
2145150RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175444.12e-69transcription factor bHLH25-like
TrEMBLA0A0A9D0A71e-69A0A0A9D0A7_ARUDO; Uncharacterized protein
TrEMBLA0A3B6JEJ49e-70A0A3B6JEJ4_WHEAT; Uncharacterized protein
STRINGGRMZM2G120021_P015e-63(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3328334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.22e-30bHLH family protein