PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g11210.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 718aa    MW: 77076.5 Da    PI: 7.9037
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g11210.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.73.1e-1615541756
                                  HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  +lF+++++p+ ++r++L+++lgL+ rqVk+WFqNrR++ k
  Zjn_sc00009.1.g11210.1.am.mk 15 RLFKESPHPDDKQRQQLSRQLGLSARQVKFWFQNRRTQIK 54
                                  68**********************************9877 PP
2START174.56.5e-551774052206
                                   HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCG CS
                         START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddk 69 
                                   la +a++el ++ +a+ep+Wv+s+    + +n+de+   f++++           s+ea+ra+gvv  ++++lv  ++d++
  Zjn_sc00009.1.g11210.1.am.mk 177 LAGRALEELTTMCSAGEPLWVRSVetgrDVLNYDEYPLLFPRGDDgpgggrrapWSVEASRATGVVYLDTTRLVHAFMDVS 257
                                   67899**********************99***********9988899********************************** PP

                                   GCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.. CS
                         START  70 eqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe. 138
                                    qW+e ++    ka+tl vi+ g      ga+qlm+ae q+l+p+vp R+f f+Ry+++l a++w++vdvS d  ++  + 
  Zjn_sc00009.1.g11210.1.am.mk 258 -QWKELFPsmisKASTLSVIQAGenddqdGAIQLMSAEVQMLTPVVPtREFRFLRYCKKLAAEKWAVVDVSFDKAEPDAQt 337
                                   .*******9999***************************************************************999998 PP

                                   -TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                         START 139 sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                   ss   ++ + pSg+++e+  ngh+kvtwveh+ ++ +++++++r    sgla+ga++wva+lq qce+
  Zjn_sc00009.1.g11210.1.am.mk 338 SSTACKCLKNPSGCVVEERTNGHCKVTWVEHTTCRNATVTSMYRAAAASGLAFGARRWVAALQVQCER 405
                                   99999*************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.0E-8760IPR001356Homeobox domain
CDDcd000861.74E-131554No hitNo description
PfamPF000461.1E-131554IPR001356Homeobox domain
SuperFamilySSF466897.1E-131557IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-141563IPR009057Homeodomain-like
PROSITE profilePS5007114.3981756IPR001356Homeobox domain
PROSITE patternPS0002703154IPR017970Homeobox, conserved site
PROSITE profilePS5084837.125167408IPR002913START domain
SuperFamilySSF559612.2E-27170405No hitNo description
CDDcd088752.03E-92171404No hitNo description
SMARTSM002343.8E-47176405IPR002913START domain
PfamPF018522.5E-44177405IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-5233389IPR023393START-like domain
SuperFamilySSF559611.65E-8423585No hitNo description
SuperFamilySSF559611.65E-8634668No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MTLLADAFMV DSTGRLFKES PHPDDKQRQQ LSRQLGLSAR QVKFWFQNRR TQIKAIQERQ  60
ENALLKSELE KLQGENLAMR ELVRKPSHCP GCGVPFSGNT TAATTSEEHL LRLENARLKA  120
EVERLRGTPG TTPAVGAVAS PASPSCRAVQ TNSPSSLDDY YVDGFLAGHG KARILDLAGR  180
ALEELTTMCS AGEPLWVRSV ETGRDVLNYD EYPLLFPRGD DGPGGGRRAP WSVEASRATG  240
VVYLDTTRLV HAFMDVSQWK ELFPSMISKA STLSVIQAGE NDDQDGAIQL MSAEVQMLTP  300
VVPTREFRFL RYCKKLAAEK WAVVDVSFDK AEPDAQTSST ACKCLKNPSG CVVEERTNGH  360
CKVTWVEHTT CRNATVTSMY RAAAASGLAF GARRWVAALQ VQCERMVFSV ATNIPTRDSN  420
GVSTPAGRRS VLKLAHRMTS SLCRGIGASR GVAWSRAPNG GGGGDVRVMS RRNTGDPGEP  480
QGLIACAVLS TWLPVSPTAL LDFLRDESRR HEVSRRLVAC LWDATLLGRS VHSCANVTKG  540
KDRGNCVTIY VTFTPSRAIT TLHLSQKEPS IVVADSTCLL PSLPHQAANS SAAEDKTGAG  600
NWIVQDSSTG PCESVVAYAP VDAAILRRVI DGHDPSDVAL LPCGFAITPD GLDSRPAVIT  660
SSVDLDGSAA KGALVTVAFQ AMATPTDGVM PPDSVAAAAG LVVSTLGNIK KALRCEDC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701492.10.0homeobox-leucine zipper protein ROC9
SwissprotQ5JMF30.0ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A368RB900.0A0A368RB90_SETIT; Uncharacterized protein
STRINGSi004904m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein