PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g09580.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 1225aa MW: 129773 Da PI: 11.0055

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g09580.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.1	1.2e-19	1025	1075	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp k+ r++lg+++taeeAa+a++aa+++++g Zjn_sc00009.1.g09580.1.am.mk 1025 PHYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRG 1075 68******.******83...36***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.45E-16	1025	1084	No hit	No description
Pfam	PF00847	1.1E-13	1025	1075	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.408	1026	1083	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-21	1026	1084	IPR016177	DNA-binding domain
SMART	SM00380	8.7E-38	1026	1089	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.8E-31	1026	1083	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.8E-10	1027	1038	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.8E-10	1049	1065	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1225 aa Download sequence Send to blast
MATSHGTAAD TVLPPSALNS PARARACPEG RVECTNNYEL EMAAGARGAS AGDKVAGSQR 60 WLRQATQEKP GTAYSSMLPA LMVDSLSPSL PSPPLPPPPS SSSESNASRA SRDRRPGVVR 120 LTIMTRLPRF LAPVARGGFP VLLSGSPASP AADGGGGVPF RDAYVRVVVG GGWRKRALLG 180 GHLASRRVAH RLLVVAGGGV VSARRRGGAG GGGGGGFAEE SVSEEVEADA QGQGERTAKK 240 RREEQDETRT VRVVLISVCA WPWPDSTREA TKRETNETSC TPPAGCSAFY PRRGSAEPRA 300 PAVVNHKARS VPLAQLRAMQ AASECRPERP PPPSPPPISG APPRPSLPWR QFAIDCVQAT 360 LRVDKVSGPL EGQEQARFAP ATLSFSFPFS SGSVGACVSV VATTTKVPAG LQLNAGAICS 420 LQLLDDLKEL QSPFPFQSKV AECPPWSAAQ TSLSHRSVPL AQLRATQAAS ECRPERRLAA 480 SARQQRRGRG HAERGQPGRG VNPTAPRSGR RQLPMLRDTA ISRRQPNRVR LRAAAGEESS 540 RTLPSVVKWA ATRVGDNDSD GWTWYHGGLL AREFSPCTGR RTSRICQLLG VGPRPHVAIR 600 RRPPAGLHLA AMNFSVHNCV SEVRRILAVI DGRYLRRRLT FSPRGVERGL TRPAGQTARG 660 GGAGACGWLY CLSVYGGHLE IKSGQRRWVP HGPAIQGSKQ SESLPMPTSR GRSTSRQAHR 720 SAPHAEPDLA VSVVTARPST PVMKFGPPLA ASSRIFARSR ALRQRKKKEP TSLAAVPACR 780 PPIESESSPR ASNHEAPPGF PHDKVPFSAR TRPAQVDDPL AAALDGSVGV GAERESGVRG 840 TDGWDEDDRQ RGRGGRRGPT CLYACCVPCR RRRRRPAAPD PSSGRTDRDA SSSAPRGVTL 900 AGKRPQNFNA ASLKTTGGGE DRTVKPLADC AEFYSLSPLF TNHSSSAFPP GCRPINGAPL 960 KPRLILDATS THPTSAPRRT ETPAPARHLY TPGAAPMALK TAEKTPVSPA TGLGLGVGGG 1020 VGMGPHYRGV RKRPWGRFAA EIRDPAKKSR VWLGTYDTAE EAARAYDAAA REFRGAKAKT 1080 NFPYGSSQCP APAGAGSPSS NCTVDSSGSG CGAQAPMQAM PLPPSLDHDL FHRTAAAIRF 1140 PFKGFPVALP APNPYFFYEQ AAAAAAAASG YRMLKVAPPV TVAAVAQSDS DSSSVVDHTP 1200 SPPAATTKKE AAFDLDLNWP PPEEN

Sequence ? help Back to Top

Protein Sequence Length: 1225 aa Download sequence Send to blast

MATSHGTAAD TVLPPSALNS PARARACPEG RVECTNNYEL EMAAGARGAS AGDKVAGSQR  60
WLRQATQEKP GTAYSSMLPA LMVDSLSPSL PSPPLPPPPS SSSESNASRA SRDRRPGVVR  120
LTIMTRLPRF LAPVARGGFP VLLSGSPASP AADGGGGVPF RDAYVRVVVG GGWRKRALLG  180
GHLASRRVAH RLLVVAGGGV VSARRRGGAG GGGGGGFAEE SVSEEVEADA QGQGERTAKK  240
RREEQDETRT VRVVLISVCA WPWPDSTREA TKRETNETSC TPPAGCSAFY PRRGSAEPRA  300
PAVVNHKARS VPLAQLRAMQ AASECRPERP PPPSPPPISG APPRPSLPWR QFAIDCVQAT  360
LRVDKVSGPL EGQEQARFAP ATLSFSFPFS SGSVGACVSV VATTTKVPAG LQLNAGAICS  420
LQLLDDLKEL QSPFPFQSKV AECPPWSAAQ TSLSHRSVPL AQLRATQAAS ECRPERRLAA  480
SARQQRRGRG HAERGQPGRG VNPTAPRSGR RQLPMLRDTA ISRRQPNRVR LRAAAGEESS  540
RTLPSVVKWA ATRVGDNDSD GWTWYHGGLL AREFSPCTGR RTSRICQLLG VGPRPHVAIR  600
RRPPAGLHLA AMNFSVHNCV SEVRRILAVI DGRYLRRRLT FSPRGVERGL TRPAGQTARG  660
GGAGACGWLY CLSVYGGHLE IKSGQRRWVP HGPAIQGSKQ SESLPMPTSR GRSTSRQAHR  720
SAPHAEPDLA VSVVTARPST PVMKFGPPLA ASSRIFARSR ALRQRKKKEP TSLAAVPACR  780
PPIESESSPR ASNHEAPPGF PHDKVPFSAR TRPAQVDDPL AAALDGSVGV GAERESGVRG  840
TDGWDEDDRQ RGRGGRRGPT CLYACCVPCR RRRRRPAAPD PSSGRTDRDA SSSAPRGVTL  900
AGKRPQNFNA ASLKTTGGGE DRTVKPLADC AEFYSLSPLF TNHSSSAFPP GCRPINGAPL  960
KPRLILDATS THPTSAPRRT ETPAPARHLY TPGAAPMALK TAEKTPVSPA TGLGLGVGGG  1020
VGMGPHYRGV RKRPWGRFAA EIRDPAKKSR VWLGTYDTAE EAARAYDAAA REFRGAKAKT  1080
NFPYGSSQCP APAGAGSPSS NCTVDSSGSG CGAQAPMQAM PLPPSLDHDL FHRTAAAIRF  1140
PFKGFPVALP APNPYFFYEQ AAAAAAAASG YRMLKVAPPV TVAAVAQSDS DSSSVVDHTP  1200
SPPAATTKKE AAFDLDLNWP PPEEN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	8e-21	1024	1083	3	63	ATERF1
3gcc_A	8e-21	1024	1083	3	63	ATERF1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	869	874	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44210.1	2e-18	erf domain protein 9