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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00009.1.g08670.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 312aa MW: 35343 Da PI: 7.2144 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.1 | 7.2e-53 | 20 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeelvv+yL++kv++++l++ +i+evd+yk++PwdLp+k+ ++kewyfF++rd+ky++g+r+nra+ Zjn_sc00009.1.g08670.1.sm.mkhc 20 LPPGFRFHPTDEELVVHYLCRKVARQQLPV-PIIAEVDLYKFDPWDLPEKALFGRKEWYFFTPRDRKYPNGSRPNRAAG 97 79****************************.88***************8877899************************ PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatg dk++ k + ++ g+kk Lvfy+g+ap+g+ktdW+mheyrl Zjn_sc00009.1.g08670.1.sm.mkhc 98 RGYWKATGADKPIAPKgSPKAAGIKKALVFYSGKAPRGVKTDWIMHEYRL 147 **************98556779**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-63 | 16 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.971 | 20 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-27 | 21 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MGMVAAEGSG RRDAEAELNL PPGFRFHPTD EELVVHYLCR KVARQQLPVP IIAEVDLYKF 60 DPWDLPEKAL FGRKEWYFFT PRDRKYPNGS RPNRAAGRGY WKATGADKPI APKGSPKAAG 120 IKKALVFYSG KAPRGVKTDW IMHEYRLADA DRGPGKKGSQ KLDEWVLCRL YNKKNNWEKV 180 KVEELQEQET APHHRQRKVE IMDTLADTMS DSIQTHDSEI DNAPGMQNSF GDMAQGQATV 240 PNSMVTVKED NDWFTDMNFD ELQASYMNMG QMVNPSLGQT VNPAAGQDYH AGYLQSISAS 300 QMRMWQTILP PF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-95 | 12 | 179 | 7 | 174 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM017003 | 0.0 | KM017003.1 Miscanthus lutarioriparius NAC4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816775.1 | 0.0 | NAC domain-containing protein 68-like | ||||
Swissprot | Q52QH4 | 1e-162 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A220T1T2 | 0.0 | A0A220T1T2_9POAL; Stress responsive NAC transcription factor | ||||
STRING | Si002386m | 1e-178 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5389 | 37 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 7e-86 | NAC domain containing protein 32 |