PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00009.1.g05270.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 30978.1 Da PI: 9.3164 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.3e-20 | 147 | 197 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g+ Zjn_sc00009.1.g05270.1.am.mkhc 147 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRGN 197 7********.**********7.....337*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.5E-14 | 147 | 196 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 147 | 205 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.646 | 147 | 204 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-33 | 147 | 205 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-35 | 147 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-12 | 148 | 159 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.27E-13 | 155 | 206 | No hit | No description |
PRINTS | PR00367 | 8.4E-12 | 170 | 186 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MCFELADPRG SGGAGWPVAK GGGQEQDDGA ASEGMVTGAA GLMSDHYQAQ EMSTMVSALT 60 NVVAGGLHPW GAGASTESGR EEQAMRGGGY VHEMGMYPGA PSPEFAASVQ SSGTQSAGAS 120 AAAGMEEHHH LASAVANAED PDTPRRRYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFETA 180 EAAARAYDEA ALRFRGNRAK LNFPEDARLY PASSAATATP AHPAPAVAAS STSQAVYAGA 240 AQDSSDYLRA TRRRTGTGRA RWPTRRPGPR GPTRRASSRH HLTPKDSSRA ELLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-23 | 148 | 204 | 6 | 63 | ATERF1 |
3gcc_A | 5e-23 | 148 | 204 | 6 | 63 | ATERF1 |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091407 | 3e-92 | FP091407.1 Phyllostachys edulis cDNA clone: bphyem102c19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021311254.1 | 5e-59 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A1E5WKI7 | 8e-61 | A0A1E5WKI7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3B6FSV8 | 9e-61 | A0A3B6FSV8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Q6H7 | 9e-61 | A0A446Q6H7_TRITD; Uncharacterized protein | ||||
STRING | GRMZM2G149756_P01 | 2e-57 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6232 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 7e-21 | ethylene response factor 110 |