PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g05270.1.am.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 294aa    MW: 30978.1 Da    PI: 9.3164
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g05270.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-20147197256
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g+
  Zjn_sc00009.1.g05270.1.am.mkhc 147 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRGN 197
                                     7********.**********7.....337*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.5E-14147196IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-22147205IPR016177DNA-binding domain
PROSITE profilePS5103225.646147204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-33147205IPR001471AP2/ERF domain
SMARTSM003803.4E-35147210IPR001471AP2/ERF domain
PRINTSPR003678.4E-12148159IPR001471AP2/ERF domain
CDDcd000181.27E-13155206No hitNo description
PRINTSPR003678.4E-12170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MCFELADPRG SGGAGWPVAK GGGQEQDDGA ASEGMVTGAA GLMSDHYQAQ EMSTMVSALT  60
NVVAGGLHPW GAGASTESGR EEQAMRGGGY VHEMGMYPGA PSPEFAASVQ SSGTQSAGAS  120
AAAGMEEHHH LASAVANAED PDTPRRRYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFETA  180
EAAARAYDEA ALRFRGNRAK LNFPEDARLY PASSAATATP AHPAPAVAAS STSQAVYAGA  240
AQDSSDYLRA TRRRTGTGRA RWPTRRPGPR GPTRRASSRH HLTPKDSSRA ELLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-23148204663ATERF1
3gcc_A5e-23148204663ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0914073e-92FP091407.1 Phyllostachys edulis cDNA clone: bphyem102c19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311254.15e-59ethylene-responsive transcription factor ABR1
TrEMBLA0A1E5WKI78e-61A0A1E5WKI7_9POAL; Uncharacterized protein
TrEMBLA0A3B6FSV89e-61A0A3B6FSV8_WHEAT; Uncharacterized protein
TrEMBLA0A446Q6H79e-61A0A446Q6H7_TRITD; Uncharacterized protein
STRINGGRMZM2G149756_P012e-57(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.17e-21ethylene response factor 110