PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g03440.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 365aa    MW: 41197.3 Da    PI: 10.5981
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g03440.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.98.5e-1484171197
                                   EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                   ffkv+     ++++ + +p +fa+++ +   ++s  + led+ g +W+v+l  r ++    l+ GW++Fv ++ +  g+f+
  Zjn_sc00009.1.g03440.1.sm.mk  84 FFKVM--VGRFSES-MDIPPPFAKTIlD--MAGS-NIYLEDSFGLRWRVRL--RLRGAVLSLGHGWNNFVLDHAVSCGEFL 156
                                   66666..5555555.99******99952..2343.7***************..77777799******************** PP

                                   EEEE-SSSEE..EEEEE CS
                            B3  81 vFkldgrsefelvvkvf 97 
                                   vF+ + rs f  +v++f
  Zjn_sc00009.1.g03440.1.sm.mk 157 VFRQIARSVF--TVQMF 171
                                   ***9888888..77766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-2080174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1781174IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.92981174IPR003340B3 DNA binding domain
CDDcd100172.56E-982171No hitNo description
PfamPF023624.3E-1184171IPR003340B3 DNA binding domain
SMARTSM010192.6E-1184174IPR003340B3 DNA binding domain
SMARTSM010190.013256365IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-10299362IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-8299363No hitNo description
SuperFamilySSF1019367.85E-12302362IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.474305365IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAVTALKKEQ EDGVVHIDSG EDEEAEKVVK RRRKRKKKKA IDPRCTKRPC VDCTRRCARI  60
HGRVSSSSSG NNNKARPVPA VPSFFKVMVG RFSESMDIPP PFAKTILDMA GSNIYLEDSF  120
GLRWRVRLRL RGAVLSLGHG WNNFVLDHAV SCGEFLVFRQ IARSVFTVQM FAPSAIERLY  180
LCERNRRQSR KRKPRQKASS PRIQTGKIIK SNGGSCKRKR RADAQSEEVP DDCKMSAHLC  240
IDDSDVSDSA SELKCLGKSL KAPEAGESQE VSKALTTNQE GNVQRELPSR LPVIPRTKKQ  300
GRKVVVLKDP FKRLWPALYQ CTPRFSGFIT GWVEISRENS LREGDTCEFE LSGKKEFSFQ  360
VRSGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13038RRRKRKKKK
23236RKRKK
33238RKRKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972298.11e-110B3 domain-containing protein Os01g0905400 isoform X1
SwissprotQ5N6V01e-79Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A1E5W8C91e-109A0A1E5W8C9_9POAL; B3 domain-containing protein
TrEMBLA0A368REZ51e-108A0A368REZ5_SETIT; Uncharacterized protein
STRINGPavir.J19231.1.p1e-110(Panicum virgatum)
STRINGSi004140m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.14e-06B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]