PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g02960.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 462aa MW: 49244.5 Da PI: 8.3674

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g02960.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	2e-09	292	339	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Zjn_sc00009.1.g02960.1.sm.mkhc 292 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVVKAVMLDEIINYVQSLQ 339 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-15	286	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.43E-10	286	343	No hit	No description
PROSITE profile	PS50888	14.932	288	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-16	290	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-6	292	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	294	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MNCVPPDQMP PATAPACFLN LNWDQSMATA GTAGEQHLDA ALSSMVSSPA SNSTPAAASD 60 GLALHGISPQ PQYGGTLLSS PPKLNLSMMG PFHHYPPPPQ VGGAGAAGLQ FLENLMPGHL 120 DQFLTDPGFA ERAARLSNFD GRAGGVGYGD SVPGQFSLPD AGPVGALKEL EFGNGRDESS 180 VSNPASASAE MALKGPSDGN ARKRKASGKG KGKDGPVSTS AKDLAKEESS GKRCKSGDES 240 NAAEENFTKG KAAQSSSENG DKKEGKNSTS KPPEPPKDYI HVRARRGEAT DSHSLAERVR 300 REKISQRMKL LQDLVPGCNK VVVKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQLDFNN 360 LPNLLSKDMQ QSCGLSENSH FPLETSGAPM PYISQPHQGN PLSCSLTNGM DNQSSMRPWG 420 LSGKMIFKVS FIWTWGKVRK WLPLPTATMR KHSEIQPNNV GP

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MNCVPPDQMP PATAPACFLN LNWDQSMATA GTAGEQHLDA ALSSMVSSPA SNSTPAAASD  60
GLALHGISPQ PQYGGTLLSS PPKLNLSMMG PFHHYPPPPQ VGGAGAAGLQ FLENLMPGHL  120
DQFLTDPGFA ERAARLSNFD GRAGGVGYGD SVPGQFSLPD AGPVGALKEL EFGNGRDESS  180
VSNPASASAE MALKGPSDGN ARKRKASGKG KGKDGPVSTS AKDLAKEESS GKRCKSGDES  240
NAAEENFTKG KAAQSSSENG DKKEGKNSTS KPPEPPKDYI HVRARRGEAT DSHSLAERVR  300
REKISQRMKL LQDLVPGCNK VVVKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQLDFNN  360
LPNLLSKDMQ QSCGLSENSH FPLETSGAPM PYISQPHQGN PLSCSLTNGM DNQSSMRPWG  420
LSGKMIFKVS FIWTWGKVRK WLPLPTATMR KHSEIQPNNV GP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971039.1	0.0	transcription factor bHLH77
TrEMBL	A0A0A9QTY7	0.0	A0A0A9QTY7_ARUDO; Uncharacterized protein
STRING	Si001242m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-54	bHLH family protein