PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g02810.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 174aa MW: 19065.6 Da PI: 6.7221

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g02810.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.6	3.1e-11	67	93	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +CkF+H+p Zjn_sc00009.1.g02810.1.sm.mkhc 67 PGEPDCTYYLRTGLCRFGMTCKFNHPP 93 5789*********************97 PP
2	zf-CCCH	25.4	2.4e-08	145	162	2	19
-S---SGGGGTS--TTTT CS zf-CCCH 2 ktelCrffartGtCkyGd 19 ++elC+f++r+G+Ck+G+ Zjn_sc00009.1.g02810.1.sm.mkhc 145 GEELCKFYSRYGICKFGA 162 78***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.9E-5	66	93	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.455	66	94	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.6E-9	68	93	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.9E-6	71	94	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.9E-4	72	92	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5	143	168	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.944	143	163	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-5	145	163	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MEDAGRESAP AAVTVSAVPA PPQPSTTKAA ADTSSPDPSA LYEEGMWQQM AMDSGATMQP 60 GPYPEWPGEP DCTYYLRTGL CRFGMTCKFN HPPDRNLAIA SARMKGEYPE RVGHPECQTG 120 TCKFGPTVSC SHLGPNKLMD LLNKGEELCK FYSRYGICKF GANYCPDKLR QDRK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT037035	5e-99	BT037035.1 Zea mays full-length cDNA clone ZM_BFb0152E14 mRNA, complete cds.
GenBank	EU965399	5e-99	EU965399.1 Zea mays clone 285780 zinc finger CCCH type domain-containing protein ZFN-like 2 mRNA, complete cds.
GenBank	JX428467	5e-99	JX428467.1 Zea mays subsp. mays clone pUT3062 C3H49 C3H type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971057.1	2e-74	zinc finger CCCH domain-containing protein 12
Swissprot	Q5JLB5	4e-57	C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBL	K3XI36	4e-73	K3XI36_SETIT; Uncharacterized protein
STRING	Si001558m	7e-74	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1153	38	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	5e-40	zinc finger protein 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Deng H,Liu H,Li X,Xiao J,Wang S A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease. Plant Physiol., 2012. 158(2): p. 876-89 [PMID:22158700]