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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00009.1.g02810.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 174aa MW: 19065.6 Da PI: 6.7221 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.6 | 3.1e-11 | 67 | 93 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +CkF+H+p Zjn_sc00009.1.g02810.1.sm.mkhc 67 PGEPDCTYYLRTGLCRFGMTCKFNHPP 93 5789*********************97 PP | |||||||
2 | zf-CCCH | 25.4 | 2.4e-08 | 145 | 162 | 2 | 19 |
-S---SGGGGTS--TTTT CS zf-CCCH 2 ktelCrffartGtCkyGd 19 ++elC+f++r+G+Ck+G+ Zjn_sc00009.1.g02810.1.sm.mkhc 145 GEELCKFYSRYGICKFGA 162 78***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.9E-5 | 66 | 93 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.455 | 66 | 94 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-9 | 68 | 93 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-6 | 71 | 94 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 72 | 92 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.944 | 143 | 163 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-5 | 145 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MEDAGRESAP AAVTVSAVPA PPQPSTTKAA ADTSSPDPSA LYEEGMWQQM AMDSGATMQP 60 GPYPEWPGEP DCTYYLRTGL CRFGMTCKFN HPPDRNLAIA SARMKGEYPE RVGHPECQTG 120 TCKFGPTVSC SHLGPNKLMD LLNKGEELCK FYSRYGICKF GANYCPDKLR QDRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037035 | 5e-99 | BT037035.1 Zea mays full-length cDNA clone ZM_BFb0152E14 mRNA, complete cds. | |||
GenBank | EU965399 | 5e-99 | EU965399.1 Zea mays clone 285780 zinc finger CCCH type domain-containing protein ZFN-like 2 mRNA, complete cds. | |||
GenBank | JX428467 | 5e-99 | JX428467.1 Zea mays subsp. mays clone pUT3062 C3H49 C3H type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971057.1 | 2e-74 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q5JLB5 | 4e-57 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | K3XI36 | 4e-73 | K3XI36_SETIT; Uncharacterized protein | ||||
STRING | Si001558m | 7e-74 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 5e-40 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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