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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zjn_sc00009.1.g02110.1.sm.mkhc |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
NAC |
| Protein Properties |
Length: 227aa MW: 24873 Da PI: 8.4049 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00009.1.g02110.1.sm.mkhc | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 106.5 | 3.3e-33 | 21 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79
lp GfrF+Ptdeel+ +yL++k+ + +l++ ++i+ +d+ +++PwdL ++e +fF+ ++++ +r ra+
Zjn_sc00009.1.g02110.1.sm.mkhc 21 LPIGFRFRPTDEELLLHYLRRKALACPLPA-DIIPVADLARLHPWDLV-PPGDADEERFFFHLPETRHW--RRGGRAAG 95
699***************************.99**************4.34456789999999988765..6999**** PP
NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+g+W+a+gk+k v+s ++ vg k+tLvf ++ g++tdWvmheyrl
Zjn_sc00009.1.g02110.1.sm.mkhc 96 TGVWRASGKEKLVVSPrCKRPVGAKRTLVFC---HQGGKRTDWVMHEYRL 142
**************9877889*********9...678899********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 227 aa
Download sequence Send
to blast |
MEARQPRQAG GGGGRVGLAG LPIGFRFRPT DEELLLHYLR RKALACPLPA DIIPVADLAR 60
LHPWDLVPPG DADEERFFFH LPETRHWRRG GRAAGTGVWR ASGKEKLVVS PRCKRPVGAK 120
RTLVFCHQGG KRTDWVMHEY RLLPAGLLVH NPSSGPHVTS CHGAAAGAED WVVCRIFKRT 180
KPGNGGRGRE EEVEEIPSSP SSCVTDNSSH SDHEEEGEQS SSGDSRV
|
| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-26 | 21 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-26 | 21 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-26 | 21 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-26 | 21 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-26 | 21 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 1e-26 | 21 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 1e-26 | 21 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 1e-26 | 21 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 1e-26 | 21 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 1e-26 | 21 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 1e-26 | 21 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 1e-26 | 21 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 1e-26 | 21 | 179 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-26 | 21 | 179 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP094930 | 2e-92 | FP094930.1 Phyllostachys edulis cDNA clone: bphylf042n13, full insert sequence. |
