PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00008.1.g11840.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 514aa MW: 56481.1 Da PI: 7.2715

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00008.1.g11840.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.3e-11	329	372	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR r+N+ + Lr ++P+ +K+sK +L A+++Ik+Lq Zjn_sc00008.1.g11840.1.am.mk 329 DAERRRRGRLNNNILALRAVVPNI-----TKMSKEHTLSDAIDHIKNLQ 372 68*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.157	322	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.9E-17	324	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.4E-9	328	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-13	328	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-15	329	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MCKDWMCFCC ALDSHKEDMA LAPAKDRGVS RVADDVGGSE ANSCHRLLAN HGRTMNDGAC 60 TQECVEKSHG YPVGVCRGSK MLLLPSSTDT PCQRSRCVRT ENTSRVETAK REEVSDGYTP 120 ARVESMAVTK KAVVCFWLLS LLALSSEEVR LSDAADCIFI IHPFCKHDGD CDKPCENESD 180 GFDGYIYTQG MCRDWTCFCC APDHHKNKGK PGGPHKPLAP DHSAPLQPTP LRTRGAVALA 240 FKASPLRFLS CRMPLAYNFI SHPQPRGEGV GPSCVRGEAA MPRRQRARSS EEVKAEDFVA 300 SVLNFAGGED DDGQPPPAAT TVFKSKNLDA ERRRRGRLNN NILALRAVVP NITKMSKEHT 360 LSDAIDHIKN LQNQVQELQQ QLDEWPGEVL EKHGSALSSE SFAAAENTQY QGLVELVPLA 420 PQKYHLKVFC KKSGVFTKVL EALCSYNAQV TSLSTITFYG YAESVFSIEV KGEQDVVMME 480 LRSLLAGIVE ARNVASRRGP HDRSDSATRL ALIS

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MCKDWMCFCC ALDSHKEDMA LAPAKDRGVS RVADDVGGSE ANSCHRLLAN HGRTMNDGAC  60
TQECVEKSHG YPVGVCRGSK MLLLPSSTDT PCQRSRCVRT ENTSRVETAK REEVSDGYTP  120
ARVESMAVTK KAVVCFWLLS LLALSSEEVR LSDAADCIFI IHPFCKHDGD CDKPCENESD  180
GFDGYIYTQG MCRDWTCFCC APDHHKNKGK PGGPHKPLAP DHSAPLQPTP LRTRGAVALA  240
FKASPLRFLS CRMPLAYNFI SHPQPRGEGV GPSCVRGEAA MPRRQRARSS EEVKAEDFVA  300
SVLNFAGGED DDGQPPPAAT TVFKSKNLDA ERRRRGRLNN NILALRAVVP NITKMSKEHT  360
LSDAIDHIKN LQNQVQELQQ QLDEWPGEVL EKHGSALSSE SFAAAENTQY QGLVELVPLA  420
PQKYHLKVFC KKSGVFTKVL EALCSYNAQV TSLSTITFYG YAESVFSIEV KGEQDVVMME  480
LRSLLAGIVE ARNVASRRGP HDRSDSATRL ALIS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11982	30	36