PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g09440.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 323aa    MW: 34094.1 Da    PI: 9.427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g09440.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13252297655
                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  Zjn_sc00008.1.g09440.1.sm.mk 252 SIAERVRRTRISERIRKLQELVPSM----EKQTNTADMLDLAVDYIKDLQ 297
                                   689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.97246296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-16249306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-13250301No hitNo description
Gene3DG3DSA:4.10.280.103.6E-15251309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-13252302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10252297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MYGSTVSKDL NLPAVQPQPA TGARTPPPQM SSSGLLRYRS APSNLLGEVC VEDFDAAEGG  60
AAGHPRPDHA ADAALARLLR QSSSPAGFLN HLHMGNGYGN MLRAGGFRNG GDARVKGQLS  120
YSSRQGSVMS QISEMGSEEL GGSSPEAGSN GATAARSYSG IAATGYNAMD ATDQSHLSGA  180
KRPRGPASDP AHALPAQNGH HLVPQLSLPS GGGGGNGKTP ADMAAIEKFL QFQDAVPCKI  240
RAKRGCATHP RSIAERVRRT RISERIRKLQ ELVPSMEKQT NTADMLDLAV DYIKDLQKQV  300
KELNDSRANC TCSASKRQNQ FTC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9768151e-108EU976815.1 Zea mays clone 990854 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803424.11e-109transcription factor bHLH130-like
RefseqXP_025803426.11e-109transcription factor bHLH130-like
TrEMBLA0A0A9VBR81e-113A0A0A9VBR8_ARUDO; Uncharacterized protein
STRINGPavir.J14004.1.p1e-102(Panicum virgatum)
STRINGTRIUR3_26625-P11e-103(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-41bHLH family protein