PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g09350.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 670aa    MW: 70529.3 Da    PI: 11.0408
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g09350.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP70.92.3e-22393455176
                                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                                     +CqvegC +dls ak y+ rhkvC +h+k+pvv+v+g+eqrfCqqCs             sCrrrLa+hnerrr++
  Zjn_sc00008.1.g09350.1.am.mkhc 393 RCQVEGCGVDLSGAKPYYCRHKVCCIHAKTPVVVVAGIEQRFCQQCS-------------SCRRRLAGHNERRRRP 455
                                     6*********************************************9.............9*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.7E-21389440IPR004333Transcription factor, SBP-box
PROSITE profilePS5114122.769391455IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.28E-28392458IPR004333Transcription factor, SBP-box
PfamPF031101.3E-15394454IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
TVHRLPAPPP PPTITSAPHS RSCERWQLAT ASELSLDVTP ANSHARTSAP VIQLACAFSR  60
HTDGFERRLR YWFLDQASRG GRCGRSNGAK EGPYRQPRCG KPTQGHRRCR GAVRAQWPLP  120
PLFTSLARAV ARPPVAGRLA FLSLSPVRVT VDYTGASPVR AHEGIAVATV RRVKTAREVH  180
KARLPTKPEC PRNTIAKERV GAASGSSRGA RKESLLVVVE ASSVGVRVRR GRKETAANHW  240
RTRAHTAPHT RSVILRAAPP LLSPLLASLS PSYAALKSLF HSLLSPAKRG QRGRAGKIAT  300
TLPQQGSEAR QLAAMDTGGS GGGGGDDVHG LKFGKKIYFE QDSTAGGSRE AAGGGRKGKS  360
AAAGSSGGAA STAPTAAGAV AAATPPRAAT PPRCQVEGCG VDLSGAKPYY CRHKVCCIHA  420
KTPVVVVAGI EQRFCQQCSS CRRRLAGHNE RRRRPPPGPL NSRFGRLASS FQGVQPGDRM  480
SSAIQWQGNH DQLRPRSGAV AGYSDHAYIG PGGSVAGTSS MHPAFELPHG GCVAGVATDS  540
CCALSLLSTQ PWDYIQSGSH HHRSPAMSTA SAFEGSNPVP VSPSVMASSY AAASTWSGSR  600
VHESARNLHH HHHPSSQEGD LHMVHPGSVH HGHFSGELEL ALQGSGEPSN PPQVDHGSSG  660
AFGHSSNAMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-173944541184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1087623e-51AC108762.2 Oryza sativa Japonica Group chromosome 9 clone OSJNBb0052C07, complete sequence.
GenBankAP0149653e-51AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126173e-51CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802689.11e-117squamosa promoter-binding-like protein 17
SwissprotA3C0571e-116SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A1E5W3U71e-127A0A1E5W3U7_9POAL; Squamosa promoter-binding-like protein 17
STRINGPavir.Ba01711.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-18squamosa promoter binding protein-like 9